Input parameters:

  Query = YML056C (Len=524)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YML056C, Len=524):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSAAPLDYKKALEHLKTYSSKDGLSVQELMDSTTRGGLTYNDFLVLPGLVNFPSSAVSLQTKLTKKITLNTPFVSSPMDT 80  
WD40-rpts                                                                                      

Query       81 VTEADMAIYMALLGGIGFIHHNCTPKEQASMVKKVKMFENGFINSPIVISPTTTVGEVKVMKRKFGFSGFPVTEDGKCPG 160 
WD40-rpts                                                                                      

Query      161 KLVGLVTSRDIQFLEDDSLVVSEVMTKNPVTGIKGITLKEGNEILKQTKKGKLLIVDDNGNLVSMLSRADLMKNQNYPLA 240 
WD40-rpts                                                                                      

Query      241 SKSATTKQLLCGAAIGTIEADKERLRLLVEAGLDVVILDSSQGNSVFQLNMIKWIKETFPDLEIIAGNVATREQAANLIA 320 
WD40-rpts                                                                                      

Query      321 AGADGLRIGMGSGSICITQEVMACGRPQGTAVYNVCQFANQFGVPCMADGGVQNIGHITKALALGSSTVMMGGMLAGTTE 400 
WD40-rpts                                                                                      

Query      401 SPGEYFYKDGKRLKAYRGMGSIDAMQKTGNKGNASTSRYFSESDSVLVAQGVSGAVVDKGSIKKFIPYLYNGLQHSCQDI 480 
WD40-rpts              (_______________________WD 1_______________________)                    

Query      481 GCESLTSLKENVQNGEVRFEFRTASAQLEGGVHNLHSYEKRLYN 524 
WD40-rpts                                                  

1 WD40-repeats found in QUERY=YML056C (Len=524):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 15   409-460      2.96  236.90  0.03924       27.5%     11.33

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  409-460    DGKRLKAYRGMGSIDAMQKTGNKGNASTSRYFSESDSVLVAQGVSGAVVDKG

   WD40 Template    TGECLRTLSGHTS------------GVTSVSFSPDGKRLVSGSEDGTIKVWD