Input parameters:

  Query = YLR466W (Len=1382)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YLR466W, Len=1382):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MWKTLGRVEQLLPYASLILRNREVLFREPKRGIDEYLENDSFFQMIPVKYREIVLPKLRRDTNKMTAALKNKVAVAIDEL 80  
WD40-rpts                                                                                      

Query       81 TVPLMWMIHFAVGYPYRYPELQLLAFAGPQRNVYVDDTTRRIQLYTDYNKNGSSEPRLKTLDGLTSDYVFYFVTVLRQMQ 160 
WD40-rpts                                                                                      

Query      161 ICALGNSYDAFNHDPWMDVVGFEDPDQVTNRDISRIVLYSYMFLNTAKGCLVEYATFRQYMRELPKNAPQKLNFREMRQG 240 
WD40-rpts                                                                                      

Query      241 LIALGRHCVGSRFETDLYESATSELMANHSVQTGRNIYGVDSFSLTSVSGTTATLLQERASERWIQWLGLESDYHCSFSS 320 
WD40-rpts                                                                                      

Query      321 TRNAEDVVAGEAASSDHHQKISRVTRKRPREPKSTNDILVAGRKLFGSSFEFRDLHQLRLCHEIYMADTPSVAVQAPPGY 400 
WD40-rpts                                                                                      

Query      401 GKTELFHLPLIALASKGDVKYVSFLFVPYTVLLANCMIRLSRCGCLNVAPVRNFIEEGCDGVTDLYVGIYDDLASTNFTD 480 
WD40-rpts             (_____________________________WD 1_____________________________)         

Query      481 RIAAWENIVECTFRTNNVKLGYLIVDEFHNFETEVYRQSQFGGITNLDFDAFEKAIFLSGTAPEAVADAALQRIGLTGLA 560 
WD40-rpts                                                                                      

Query      561 KKSMDINELKRSEDLSRGLSSYPTRMFNLIKEKSEVPLGHVHKIWKKVESQPEEALKLLLALFEIEPESKAIVVASTTNE 640 
WD40-rpts                                   (_______________________________WD 2_______________

Query      641 VEELACSWRKYFRVVWIHGKLGAAEKVSRTKEFVTDGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLR 720 
WD40-rpts      ________________)                                                               

Query      721 DGGLCYLLSRKNSWAARNRKGELPPIKEGCITEQVREFYGLESKKGKKGQHVGCCGSRTDLSADTVELIERMDRLAEKQA 800 
WD40-rpts                                                                                      

Query      801 TASMSIIALPSSFQESNSSDRCRKYCSSDEDSDTCIHGSANASTNATTNSSTNATTTASTNVRTSATTTASINVRTSAIT 880 
WD40-rpts                                                                                      

Query      881 TESTNSSTNATTTASTNVRTSATTTASINVRTSATTTESTNSNTSATTTESTDSNTSATTTESTDSNTSATTTASTNSST 960 
WD40-rpts                                                                                      

Query      961 NATTTASTNSSTNATTTESTNASAKEDANKDGNAEDNRFHPVTDINKESYKRKGSQMVLLERKKLKAQFPNTSENMNVLQ 1040
WD40-rpts                                                                                      

Query     1041 FLGFRSDEIKHLFLYGIDVYFCPEGVFTQYGLCKGCQKMFELCVCWAGQKVSYRRMAWEALAVERMLRNDEEYKEYLEDI 1120
WD40-rpts                                                    (_________________________________

Query     1121 EPYHGDPVGYLKYFSVKRGEIYSQIQRNYAWYLAITRRRETISVLDSTRGKQGSQVFRMSGRQIKELYYKVWSNLRESKT 1200
WD40-rpts      ____WD 3_____________________________________)                                  

Query     1201 EVLQYFLNWDEKKCREEWEAKDDTVFVEALEKVGVFQRLRSMTSAGLQGPQYVKLQFSRHHRQLRSRYELSLGMHLRDQL 1280
WD40-rpts                                                                                      

Query     1281 ALGVTPSKVPHWTAFLSMLIGLFYNKTFRQKLEYLLEQISEVWLLPHWLDLANVEVLAADNTRVPLYMLMVAVHKELDSD 1360
WD40-rpts                                                                                      

Query     1361 DVPDGRFDIILLCRDSSREVGE 1382
WD40-rpts                            

3 WD40-repeats found in QUERY=YLR466W (Len=1382):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 12   408-471      3.47  258.15  0.02048       17.5%     24.90
  WD 2:  Seg 18   590-657      2.87  233.20  0.04390       22.5%     28.37
  WD 3:  Seg 29  1087-1166     2.95  236.35  0.03990       22.5%     27.95

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  408-471    LPLIAL----------------A-----------SKGDVKYVSFLFVPYTVLLANCMIRLSRC----------------GC--------------LNVAPVRNFIEEGCDGVT------------DLYVGIYD
   WD 2  590-657    IKEKSE----------------V-----------PLGHVHKIWKKVES-------------QPEEALKLLLALFEIEPESK--------------AIVV-----------ASTTNEVEELACSWRKYFRVVWI
   WD 3 1087-1166   AGQKVSYRRMAWEALAVERMLRNDEEYKEYLEDIEPYHGDPVGYLKYF--------------S----------------VKRGEIYSQIQRNYAWYLAI-----------TRR------------RETISVLD

   WD40 Template    TGECLR----------------T-----------LSGHTSGVTSVSFS-------------PD----------------GK--------------RLVS-----------GSE------------DGTIKVWD