Input parameters:

  Query = YLR432W (Len=523)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YLR432W, Len=523):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAVRDYKTALEFAKSLPRLDGLSVQELMDSKTRGGLTYNDFLVLPGLVDFPSSEVSLQTKLTRNITLNTPFVSSPMDTV 80  
WD40-rpts                                                                                      

Query       81 TESEMAIFMALLGGIGFIHHNCTPEDQADMVRRVKNYENGFINNPIVISPTTTVGEAKSMKERFGFSGFPVTEDGKRNGK 160 
WD40-rpts                                                                                      

Query      161 LMGIVTSRDIQFVEDNSLLVQDVMTKNPVTGAQGITLSEGNEILKKIKKGKLLIVDDNGNLVSMLSRTDLMKNQNYPLAS 240 
WD40-rpts                                                                                      

Query      241 KSATTKQLLCGAAIGTIDADKERLRLLVEAGLDVVILDSSQGNSIFQLNMIKWIKETFPDLEIIAGNVATREQAANLIAA 320 
WD40-rpts                                                                                      

Query      321 GADGLRIGMGSGSICITQEVMACGRPQGTAVYNVCEFANQFGIPCMADGGVQNIGHITKALALGSSTVMMGGMLAGTTES 400 
WD40-rpts                                                                                      

Query      401 PGEYFYQDGKRLKAYRGMGSIDAMQKTGTKGNASTSRYFSESDSVLVAQGVSGAVVDKGSIKKFIPYLYNGLQHSCQDIG 480 
WD40-rpts             (_______________________WD 1_______________________)                     

Query      481 YKSLTLLKENVQSGKVRFEFRTASAQLEGGVHNLHSYEKRLHN 523 
WD40-rpts                                                 

1 WD40-repeats found in QUERY=YLR432W (Len=523):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 15   408-459      2.89  234.18  0.04262       27.5%     11.47

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  408-459    DGKRLKAYRGMGSIDAMQKTGTKGNASTSRYFSESDSVLVAQGVSGAVVDKG

   WD40 Template    TGECLRTLSGHTS------------GVTSVSFSPDGKRLVSGSEDGTIKVWD