Input parameters:

  Query = YLR409C (Len=939)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YLR409C, Len=939):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSIDLKKRKVEEDVRSRGKNSKIFSPFRIIGNVSNGVPFATGTLGSTFYIVTCVGKTFQIYDANTLHLLFVSEKETPSSI 80  
WD40-rpts                            (_________________WD 1_________________)(_________________

Query       81 VALSAHFHYVYAAYENKVGIYKRGIEEHLLELETDANVEHLCIFGDYLCASTDDNSIFIYKKSDPQDKYPSEFYTKLTVT 160 
WD40-rpts      WD 2_________________)(_________________WD 3________________)        (__________

Query      161 EIQGGEIVSLQHLATYLNKLTVVTKSNVLLFNVRTGKLVFTSNEFPDQITTAEPAPVLDIIALGTVTGEVIMFNMRKGKR 240 
WD40-rpts      _________WD 4__________________)   (_________________WD 5________________)   (__

Query      241 IRTIKIPQSRISSLSFRTDGSSHLSVGTSSGDLIFYDLDRRSRIHVLKNIHRESYGGVTQATFLNGQPIIVTSGGDNSLK 320 
WD40-rpts      _______________WD 6_________________)          (_______________WD 7_____________

Query      321 EYVFDPSLSQGSGDVVVQPPRYLRSRGGHSQPPSYIAFADSQSHFMLSASKDRSLWSFSLRKDAQSQEMSQRLHKKQDGG 400 
WD40-rpts      __)                (_________________WD 8_________________)                     

Query      401 RVGGSTIKSKFPEIVALAIENARIGEWENIITAHKDEKFARTWDMRNKRVGRWTFDTTDDGFVKSVAMSQCGNFGFIGSS 480 
WD40-rpts           (_________________WD 9________________)(___________________WD10____________

Query      481 NGSITIYNMQSGILRKKYKLHKRAVTGISLDGMNRKMVSCGLDGIVGFYDFNKSTLLGKLKLDAPITAMVYHRSSDLFAL 560 
WD40-rpts      _______)   (_________________WD11________________)   (________________WD12______

Query      561 ALDDLSIVVIDAVTQRVVRQLWGHSNRITAFDFSPEGRWIVSASLDSTIRTWDLPTGGCIDGIIVDNVATNVKFSPNGDL 640 
WD40-rpts      __________)   (_________________WD13________________)   (_________________WD14__

Query      641 LATTHVTGNGICIWTNRAQFKTVSTRTIDESEFARMALPSTSVRGNDSMLSGALESNGGEDLNDIDFNTYTSLEQIDKEL 720 
WD40-rpts      ______________)                                                                 

Query      721 LTLSIGPRSKMNTLLHLDVIRKRSKPKEAPKKSEKLPFFLQLSGEKVGDEASVREGIAHETPEEIHRRDQEAQKKLDAEE 800 
WD40-rpts                                                                                      

Query      801 QMNKFKVTGRLGFESHFTKQLREGSQSKDYSSLLATLINFSPAAVDLEIRSLNSFEPFDEIVWFIDALTQGLKSNKNFEL 880 
WD40-rpts                                                                                      

Query      881 YETFMSLLFKAHGDVIHANNKNQDIASALQNWEDVHKKEDRLDDLVKFCMGVAAFVTTA 939 
WD40-rpts                                                                 

14 WD40-repeats found in QUERY=YLR409C (Len=939):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    23-62       6.25  372.66  0.00059       12.5%     45.05
  WD 2:  Seg  5    63-102      3.14  244.52  0.03110       10.0%     54.14
  WD 3:  Seg  9   103-141      3.89  275.44  0.01202       17.5%     48.25
  WD 4:  Seg 14   150-192      4.94  318.75  0.00315        7.5%     54.63
  WD 5:  Seg 18   196-234      6.88  398.98  0.00026       15.0%     60.26
  WD 6:  Seg 22   238-277      7.05  406.04  0.00021       32.5%     54.19
  WD 7:  Seg 27   288-323      6.03  363.89  0.00078       17.5%     47.67
  WD 8:  Seg 30   340-379      5.60  346.00  0.00135       20.0%     50.63
  WD 9:  Seg 35   406-444      3.40  255.22  0.02241        7.5%     13.68
  WD10:  Seg 38   445-488      5.74  351.81  0.00113       22.5%     56.67
  WD11:  Seg 42   492-530      7.91  441.51  7.0e-05       25.0%     56.37
  WD12:  Seg 46   534-571      5.16  327.68  0.00239       17.5%     58.04
  WD13:  Seg 50   575-613      9.76  517.68  6.6e-06       42.5%     56.63
  WD14:  Seg 54   617-655      5.01  321.49  0.00289       30.0%     52.96

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   23-62     IFS----P---FRIIGNVSNGVPFATGTL-GST-FYIVTCVGK-TFQIYD
   WD 2   63-102    ANT----L--HLLFVSEKETPSSIVALSA-HFH-YVYAAY-EN-KVGIYK
   WD 3  103-141    RGI----E---EHLLELETDA-NVEHLCI-FGD-YLCASTDDN-SIFIYK
   WD 4  150-192    PSE----FYTKLTVTEIQGGEIVSLQHLA-TYL-NKLTVVTKS-NVLLFN
   WD 5  196-234    -GK----L---VFTSNEFPDQITTAEPAP-VLD-IIALGTVTG-EVIMFN
   WD 6  238-277    -GK----R---IRTIKIPQSRISSLSFRT-DGSSHLSVGTSSG-DLIFYD
   WD 7  288-323    KN-----------IHRESYGGVTQATFLN-GQP-IIVTSGGDN-SLKEYV
   WD 8  340-379    -PR----Y---LRSRGGHSQPPSYIAFADSQSH-FMLSASKDR-SLWSFS
   WD 9  406-444    TIK----S----KFPEIVALAIENARIGE-WEN-IITAHKDEK-FARTWD
   WD10  445-488    MRNKRVGR---WTFDTTDDGFVKSVAMSQ-CGN-FGFIGSSNG-SITIYN
   WD11  492-530    -GI----L---RKKYKLHKRAVTGISLDG-MNR-KMVSCGLDG-IVGFYD
   WD12  534-571    -ST----L---LGKLKLDAP-ITAMVYHR-SSD-LFALALDDL-SIVVID
   WD13  575-613    -QR----V---VRQLWGHSNRITAFDFSP-EGR-WIVSASLDS-TIRTWD
   WD14  617-655    -GG----C---IDGIIVD-NVATNVKFSP-NGD-LLATTHVTGNGICIWT

   WD40 Template    TGE----C---LRTLSGHTSGVTSVSFSP-DGK-RLVSGSEDG-TIKVWD