Input parameters:

  Query = YLR384C (Len=1349)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YLR384C, Len=1349):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVEHDKSGSKRQELRSNMRNLITLNKGKFKPTASTAEGDEDDLSFTLLDSVFDTLSDSITCVLGSTDIGAIEVQQFMKDG 80  
WD40-rpts                                                                                      

Query       81 SRNVLASFNIQTFDDKLLSFVHFADINQLVFVFEQGDIITATYDPVSLDPAETLIEIMGTIDNGIAAAQWSYDEETLAMV 160 
WD40-rpts                                                         (_________________WD 1_______

Query      161 TKDRNVVVLSKLFEPISEYHLEVDDLKISKHVTVGWGKKETQFRGKGARAMEREALASLKASGLVGNQLRDPTMPYMVDT 240 
WD40-rpts      _________)                                                                      

Query      241 GDVTALDSHEITISWRGDCDYFAVSSVEEVPDEDDETKSIKRRAFRVFSREGQLDSASEPVTGMEHQLSWKPQGSLIASI 320 
WD40-rpts                      (______________WD 2_____________)                               

Query      321 QRKTDLGEEDSVDVIFFERNGLRHGEFDTRLPLDEKVESVCWNSNSEALAVVLANRIQLWTSKNYHWYLKQELYASDISY 400 
WD40-rpts                       (___________________WD 3___________________)                   

Query      401 VKWHPEKDFTLMFSDAGFINIVDFAYKMAQGPTLEPFDNGTSLVVDGRTVNITPLALANVPPPMYYRDFETPGNVLDVAC 480 
WD40-rpts                                                                                      

Query      481 SFSNEIYAAINKDVLIFAAVPSIEEMKKGKHPSIVCEFPKSEFTSEVDSLRQVAFINDSIVGVLLDTDNLSRIALLDIQD 560 
WD40-rpts                                                                                      

Query      561 ITQPTLITIVEVYDKIVLLRSDFDYNHLVYETRDGTVCQLDAEGQLMEITKFPQLVRDFRVKRVHNTSAEDDDNWSAESS 640 
WD40-rpts                                                                                      

Query      641 ELVAFGITNNGKLFANQVLLASAVTSLEITDSFLLFTTAQHNLQFVHLNSTDFKPLPLVEEGVEDERVRAIERGSILVSV 720 
WD40-rpts                                                                                      

Query      721 IPSKSSVVLQATRGNLETIYPRIMVLAEVRKNIMAKRYKEAFIVCRTHRINLDILHDYAPELFIENLEVFINQIGRVDYL 800 
WD40-rpts                                                                                      

Query      801 NLFISCLSEDDVTKTKYKETLYSGISKSFGMEPAPLTEMQIYMKKKMFDPKTSKVNKICDAVLNVLLSNPEYKKKYLQTI 880 
WD40-rpts                                                                                      

Query      881 ITAYASQNPQNLSAALKLISELENSEEKDSCVTYLCFLQDVNVVYKSALSLYDVSLALLVAQKSQMDPREYLPFLQELQD 960 
WD40-rpts                                                                                      

Query      961 NEPLRRKFLIDDYLGNYEKALEHLSEIDKDGNVSEEVIDYVESHDLYKHGLALYRYDSEKQNVIYNIYAKHLSSNQMYTD 1040
WD40-rpts                                                                                      

Query     1041 AAVAYEMLGKLKEAMGAYQSAKRWREAMSIAVQKFPEEVESVAEELISSLTFEHRYVDAADIQLEYLDNVKEAVALYCKA 1120
WD40-rpts                                                                                      

Query     1121 YRYDIASLVAIKAKKDELLEEVVDPGLGEGFGIIAELLADCKGQINSQLRRLRELRAKKEENPYAFYGQETEQADDVSVA 1200
WD40-rpts                                                                                      

Query     1201 PSETSTQESFFTRYTGKTGGTAKTGASRRTAKNKRREERKRARGKKGTIYEEEYLVQSVGRLIERLNQTKPDAVRVVEGL 1280
WD40-rpts                                                                                      

Query     1281 CRRNMREQAHQIQKNFVEVLDLLKANVKEIYSISEKDRERVNENGEVYYIPEIPVPEIHDFPKSHIVDF 1349
WD40-rpts                                                                           

3 WD40-repeats found in QUERY=YLR384C (Len=1349):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   132-170      5.50  341.83  0.00154       15.0%     50.56
  WD 2:  Seg 14   257-289      3.24  248.32  0.02769       15.0%     15.58
  WD 3:  Seg 18   338-381      2.97  237.48  0.03855       22.5%     37.09

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  132-170    -ETLIE-----IMGTIDNGIAAAQWSYDEETLAMVTKDRNVVVLS
   WD 2  257-289    ------------GDCDYFAVSSVEEVPDEDDETKSIKRRAFRVFS
   WD 3  338-381    ERNGLRHGEFDTRLPLDEKVESVCWNSNSEALAVVLAN-RIQLWT

   WD40 Template    TGECLR-----TLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD