Input parameters:

  Query = YLR341W (Len=477)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YLR341W, Len=477):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFRRGDNSNFNVQNSFFLPLEYEYTVKDNVPSKKKSSIGFFPLDDSLFTSKNNSGHHKSEQLHRGNAETIRSQFGTDAVP 80  
WD40-rpts                                                                                      

Query       81 IRIDEKEGKWDRIQDDNSSNLNYQINNSNDPASSGKYTQSIDCNHIAESKFSKKNGNIDSLRSNSATFMLNTADEDVIEF 160 
WD40-rpts                                                                             (________

Query      161 SFDDNVPYAELLSGATLEKCSLTLNEINKKLFNTLYDFRVSKDNPEENLVELILPNCVVLLNFFEDIELLADSSDEAFEK 240 
WD40-rpts      _________________________________________________WD 1___________________________

Query      241 STFINTIEFIVHDIWVETLIKNINLLQMFDADLKCYNDKYIICKLKGQYPSTNIVDIMCRLKHFSNSILETFKFGIELKE 320 
WD40-rpts      _____________________________)                                                  

Query      321 QDQCHNRNTIINYVLFSRVFSTIVLEIQKCFILIVKFMYSVNFLEKFSDEVFLSFIEILIKIVFEHQIPQLFLGIDEIIQ 400 
WD40-rpts                                                                                      

Query      401 LWLKNNEGKRQQLLSAWCNGTVQDMKQSQQRESSNAESESITSSTEEDEEGLQFNKWDVIEPFIDNIKALNQSKSHM 477 
WD40-rpts                                                                                   

1 WD40-repeats found in QUERY=YLR341W (Len=477):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   152-270      3.13  244.01  0.03159       22.5%     12.37

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  152-270    TADEDVIEFSFDDNVPYAELLSGATLEKCSLTLNEINKKLFNTLYDFRVSKDNPEENLVELILPNCVVLLNFFEDIELLADSSDEAFEKSTFINTIEFIVHDIWVETLIKNINLLQMFD

   WD40 Template    TGECLRTLSGHTSGVT-------------SVS-------------------FSPDGKR----------LVSGSE------DGT---------IK-----------------VW-----D