Input parameters:

  Query = YLR208W (Len=297)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YLR208W, Len=297):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80  
WD40-rpts      (________________WD 1_______________)     (__________________WD 2_______________

Query       81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 
WD40-rpts      __)     (__________________WD 3_________________)     (_______________________WD

Query      161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 
WD40-rpts       4_______________________)       (__________________WD 5__________________)(____

Query      241 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVHQ 297 
WD40-rpts      _________________WD 6____________________)               

6 WD40-repeats found in QUERY=YLR208W (Len=297):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-37       8.66  472.50  2.7e-05       25.0%     49.27
  WD 2:  Seg  5    43-83       7.96  443.64  6.5e-05       32.5%     53.82
  WD 3:  Seg  9    89-129      7.50  424.30  0.00012       27.5%     55.39
  WD 4:  Seg 13   135-186      7.12  408.77  0.00019       27.5%     50.59
  WD 5:  Seg 17   194-235      7.85  438.90  7.6e-05       35.0%     53.71
  WD 6:  Seg 21   236-282      7.53  425.50  0.00011       17.5%     56.00

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-37     ----------MVVIANAHNELIHDAVLD--Y-------------Y---GKRLATCSSDKTIKIFE
   WD 2   43-83     -H-------KLIDTLTGHEGPVWRVDWAHPK-------------F---GTILASCSYDGKVLIWK
   WD 3   89-129    -W-------SQIAVHAVHSASVNSVQWA--P-------------H-EYGPLLLVASSDGKVSVVE
   WD 4  135-186    -T-------TSPIIIDAHAIGVNSASWA--PATIEEDGEHNGTKE---SRKFVTGGADNLVKIWK
   WD 5  194-235    -Y-------VLESTLEGHSDWVRDVAWS--P-------------TVLLRSYLASVSQDRTCIIWT
   WD 6  236-282    QDNEQGPWKKTLLKEEKFPDVLWRASWS--L-------------S---GNVLALSGGDNKVTLWK

   WD40 Template    TG-------ECLRTLSGHTSGVTSVSFS--P-------------D---GKRLVSGSEDGTIKVWD