Input parameters:

  Query = YLR196W (Len=576)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YLR196W, Len=576):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MISATNWVPRGFSSEFPEKYVLDDEEVERINQLAQLNLDDAKATLEEAEGESGVEDDAATGSSNKLKDQLDIDDDLKEYN 80  
WD40-rpts                                                                                      

Query       81 LEEYDDEEIADNEGGKDVSMFPGLSNDSDVKFHEGEKGEDPYISLPNQEDSQEEKQELQVYPSDNLVLAARTEDDVSYLD 160 
WD40-rpts                                                                              (_______

Query      161 IYVYDDGAGFHSSDIPVEEGDEADPDVARGLVRDPALYVHHDLMLPAFPLCVEWLDYKVGSNSEEAANYAAIGTFDPQIE 240 
WD40-rpts      ________WD 1_______________)            (___________________WD 2________________

Query      241 IWNLDCVDKAFPDMILGEPLDNSMVSLKSKKKKKKSKTGHITTHHTDAVLSMAHNKYFRSVLASTSADHTVKLWDLNSGN 320 
WD40-rpts      __)                                (_________________WD 3_________________)     

Query      321 AARSLASIHSNKNVSSSEWHMLNGSILLTGGYDSRVALTDVRISDESQMSKYWSAMAGEEIETVTFASENIILCGTDSGN 400 
WD40-rpts        (________________WD 4________________)       (________________WD 5____________

Query      401 VYSFDIRNNENRKPVWTLKAHDAGISTLCSNKFIPGMMSTGAMGEKTVKLWKFPLDDATNTKGPSMVLSRDFDVGNVLTS 480 
WD40-rpts      ____)      (__________________WD 6_________________)           (________________

Query      481 SFAPDIEVAGTMVIGGVNKVLKLWDVFTNRSVRKSFKSELENVQARAKEEAQKIGKSSRIARKYTSNDNPDTVITIDDQG 560 
WD40-rpts      __WD 7__________________)     (________________WD 8_______________)             

Query      561 EDEEEREGGDEHDDMA 576 
WD40-rpts                      

8 WD40-repeats found in QUERY=YLR196W (Len=576):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   153-188      2.88  233.65  0.04332        7.5%     -7.92
  WD 2:  Seg  4   201-243      5.45  339.95  0.00163       12.5%      9.92
  WD 3:  Seg  8   276-315      6.58  386.54  0.00038       30.0%     41.38
  WD 4:  Seg 11   323-360      7.09  407.66  0.00020       17.5%     47.85
  WD 5:  Seg 14   368-405      4.61  305.20  0.00479       12.5%     43.38
  WD 6:  Seg 17   412-452      7.37  419.24  0.00014       20.0%     49.42
  WD 7:  Seg 21   464-505      6.38  378.31  0.00050       25.0%     57.08
  WD 8:  Seg 25   511-547      2.99  238.17  0.03775        5.0%     25.53

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  153-188    ------EDDVSYLDIY---VYDDGAGF--HSS---D-IPVEEGDEADPDVA
   WD 2  201-243    HDLM--LPAFPLCVEWLDYKVGSNSEE--AAN---Y-AAIGTFDPQIEIWN
   WD 3  276-315    -SKT--GHITTHHTDA---VLSMAHNK--YFR---SVLASTSADHTVKLWD
   WD 4  323-360    --RS--LASIHSNKNV---SSSEWHML--NGS---I-LLTGGYDSRVALTD
   WD 5  368-405    -QMS--KYWSAMAGEE---IETVTFAS--ENI-----ILCGTDSGNVYSFD
   WD 6  412-452    -RKP--VWTLKAHDAG---ISTLCSNKFIPGM---M-STGAMGEKTVKLWK
   WD 7  464-505    -PSM--VLSRDFDVGN---VLTSSFAP--DIEVAGT-MVIGGVNKVLKLWD
   WD 8  511-547    ----SVRKSFKSELEN---VQAR-AKE--EAQ---K-IGKSSRIARKYTSN

   WD40 Template    TGEC--LRTLSGHTSG---VTSVSFSP--DGK---R-LVSGSEDGTIKVWD