Input parameters:

  Query = YLR149C (Len=730)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YLR149C, Len=730):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTIDGTGQSKEALQDERLNTGSDKVYQNYMMPALELYDAKVSINHWQLRDCIKPGSMNQSKLYYIYDHSIRVLDTDSSVL 80  
WD40-rpts                                                                                      

Query       81 RSPVRRHNSIQPSNSGKNSTEKTSTKGSRTTGSYISKNLHVPSEKLVEFNFKPRCFTELNGLTVCGGLIGSDDKGFPSNW 160 
WD40-rpts                                                                       (______________

Query      161 NRLAQDANISLPPPSQPINISKNISFPINSHYSNPNIWKGIVEFYNQETDTMMTFTLGQFINNCVTLYDRASMQFDLFAC 240 
WD40-rpts      ______________WD 1___________________________)____________________WD 2__________

Query      241 NNDGHLYQCDVSNRDVTLVKRYADLKFPLNNASLSHDGQTMVVSGDSNKFAVYNQNELTNQFSLHYDNHPSWGSSVNRVR 320 
WD40-rpts      _________) (___________________WD 3__________________)                          

Query      321 RIPRFALPDESEYIENIYEAPNSDHGFYNSFSENDLQFATVFQNGTCAIYDIRNMATPMAEISSTRPHSHNGAFRVCRFS 400 
WD40-rpts                     (_______________WD 4_______________)         (_________________WD

Query      401 YGLDDLLFISEHQGRVHVVDTRNYVNHQVIVIPDKVNMEYINERKHNTNHNFTTNNNNENESNDSKNELQGADYRSLSRR 480 
WD40-rpts       5_________________)     (_________________WD 6________________)                

Query      481 RFSLPSMPNVTTEPWITMAQRIPKKYLEPQILPFPKVMDKISNESVLFSTKGSSSSDVAHPYKRRCSFRVRRVSTSAPTA 560 
WD40-rpts                                                                                      

Query      561 DYSNNNVNASLGTPAADSIATSSSNSAPQNLIDPLILSHQQASNDVFEDDEYYEAYNDVHSTYRVSSDYHGVSARAFESF 640 
WD40-rpts                                                                                      

Query      641 LRPPSTPDLPSDDDNFAANSRNNRGTSNFLRRPVITTQESNEFSEENNISGIDWVEDRNGSSLIIGTDYGIMRWNINSWA 720 
WD40-rpts                                                                                      

Query      721 RRSFSSYDLC 730 
WD40-rpts                

6 WD40-repeats found in QUERY=YLR149C (Len=730):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   146-206      2.94  236.10  0.04020       15.0%     -7.03
  WD 2:  Seg  9   206-250      3.31  251.21  0.02534       17.5%     40.07
  WD 3:  Seg 13   252-294      6.44  380.59  0.00046       15.0%     47.86
  WD 4:  Seg 18   336-371      6.15  368.67  0.00067       15.0%     38.07
  WD 5:  Seg 21   381-420      4.92  318.08  0.00321       25.0%     37.47
  WD 6:  Seg 24   426-464      3.42  255.81  0.02201        2.5%      9.04

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  146-206    GGL---IGSDDKGFPSNWNRLAQDANISLPPPS-----QPINISKNISFPINSHYSNPNIWK-GIVEFYN
   WD 2  206-250    NQE---T---------------------DTMMTFTLGQFINNCVTLYDRASMQFDLFACNND-GHLYQCD
   WD 3  252-294    SNRDVTL---------------------VKRYA-----DLKFPLNNASLSHDGQTMVVSGDS-NKFAVYN
   WD 4  336-371    N----------------------------IYEA-----PNSDHGFYNSFSENDLQFATVFQN-GTCAIYD
   WD 5  381-420    EIS---S---------------------TR-PH-----SHNGAFRVCRFSYGLDDLLFISEHQGRVHVVD
   WD 6  426-464    -NH---Q---------------------VIVIP-----DKVNMEYINERKHNTNHNFTTNNN-NENESND

   WD40 Template    TGE---C---------------------LRTLS-----GHTSGVTSVSFSPDGKRLVSGSED-GTIKVWD