Input parameters:

  Query = YLL066C (Len=1205)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YLL066C, Len=1205):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRTFTDFVSGAPIVRSLQKSTIRRYGYNLAPHMFLLLHVDELSIFSAYQASLPGEKKVDTERLKRDLCPRKPIEIKYFSQ 80  
WD40-rpts                                                                                      

Query       81 ICNDMMNKKDRLGDVLATAQRIRRRYNKNGSSEPRLKTLDGLTSERWIQWLGLESDYHCSFSSTRNAEDVVAGEAASSDH 160 
WD40-rpts                                                                                      

Query      161 DQKISRVTRKRPREPKSTNDILVAGQKLFGSSFEFRDLHQLRLCHEIYMADTPSVAVQAPPGYGKTELFHLPLIALASKG 240 
WD40-rpts                                                                            (_________

Query      241 DVKYVSFLFVPYTVLLANCMIRLGRCGCLNVAPVRNFIEEGCDGVTDLYVGIYDDLASTNFTDRIAAWENIVECTFRTNN 320 
WD40-rpts      ____________________WD 1_____________________________)                          

Query      321 VKLGYLIVDEFHNFETEVYRQSQFGGITNLDFDAFEKAIFLSGTAPEAVADAALQRIGLTGLAKKSMDINELKRSEDLSR 400 
WD40-rpts                                                                                      

Query      401 GLSSYPTRMFNLIKEKSEVPLGHVHKIWKKVESQPEEALKLLLALFEIEPESKAIVVASTTNEVEELACSWRKYFRVVWI 480 
WD40-rpts                  (_______________________________WD 2_______________________________)

Query      481 HGKLGAAEKVSRTKEFVTDGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLRDGGLCYLLSRKNSWAAR 560 
WD40-rpts                                                                                      

Query      561 NRKGELPPIKEGCITEQVREFYGLESKKGKKGQHVGCCGSRTDLSADTVELIERMDRLAEKQATASMSIVALPSSFQESN 640 
WD40-rpts                                                                                      

Query      641 SSDRCRKYCSSDEDSNTCIHGSANASTNATTNSSTNATTTASTNVRTSATTTASINVRTSATTTESTNSSTNATTTASTN 720 
WD40-rpts                                                                                      

Query      721 VRTSATTTASINVRTSATTTESTNSNTSATTTESTDSNTSATTTESTDSNTSATTTASTNSSTNATTTASTNSSTNATTT 800 
WD40-rpts                                                                                      

Query      801 ESTNASAKEDANKDGNAEDNRFHPVTDINKESYKRKGSQMVLLERKKLKAQFPNTSENMNVLQFLGFRSDEIKHLFLYGI 880 
WD40-rpts                                                                                      

Query      881 DIYFCPEGVFTQYGLCKGCQKMFGLCVCWAGQKVSYRRMAWEALAVERMLRNDEEYKEYLEDIEPYHGDPVGYLKFFSVK 960 
WD40-rpts                                                                                      

Query      961 RGEIYSQIQRNYAWYLAITRRRETISVLDSTRGKQGSQVFRMSGRQIKELYYKVWSNLRESKTEVLQYFLNWDEKKCREE 1040
WD40-rpts                                                                                      

Query     1041 WEAKDDTVFVEALEKVGVFQRLRSMTSAGLQGPQYVKLQFSRHHRQLRSRYELSLGMHLRDQLALGVTPSKVPHWTAFLS 1120
WD40-rpts                                                                                      

Query     1121 MLIGLFYNKTFRQKLEYLLEQISEVWLLPHWVDLANVEVLAADNTRVPLYMLMVAVHKELDSDDVPDGRFDIILLCRDSS 1200
WD40-rpts                                                                                      

Query     1201 REVGE 1205
WD40-rpts           

2 WD40-repeats found in QUERY=YLL066C (Len=1205):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   231-294      3.46  257.43  0.02094       17.5%     24.58
  WD 2:  Seg  9   413-480      2.83  231.50  0.04623       22.5%     28.14

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  231-294    LPLIALASKGDVKYVSFLFVPYTVLLANCMIRLGRC----------------GCLNVAPVRNFIEEGCDGVT------------DLYVGIYD
   WD 2  413-480    IKEKSEVPLGHVHKIWKKVES-------------QPEEALKLLLALFEIEPESKAIVV-----------ASTTNEVEELACSWRKYFRVVWI

   WD40 Template    TGECLRTLSGHTSGVTSVSFS-------------PD----------------GKRLVS-----------GSE------------DGTIKVWD