Input parameters:

  Query = YLL011W (Len=489)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YLL011W, Len=489):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKIKTIKRSADDYVPVKSTQESQMPRNLNPELHPFERAREYTKALNATKLERMFAKPFVGQLGYGHRDGVYAIAKNYGSL 80  
WD40-rpts                                                     (______________________WD 1______

Query       81 NKLATGSADGVIKYWNMSTREEFVSFKAHYGLVTGLCVTQPRFHDKKPDLKSQNFMLSCSDDKTVKLWSINVDDYSNKNS 160 
WD40-rpts      _______________)   (______________________WD 2______________________)   (_______

Query      161 SDNDSVTNEEGLIRTFDGESAFQGIDSHRENSTFATGGAKIHLWDVNRLKPVSDLSWGADNITSLKFNQNETDILASTGS 240 
WD40-rpts      _________________WD 3_______________________)   (_________________WD 4__________

Query      241 DNSIVLYDLRTNSPTQKIVQTMRTNAICWNPMEAFNFVTANEDHNAYYYDMRNLSRSLNVFKDHVSAVMDVDFSPTGDEI 320 
WD40-rpts      _______)(__________________WD 5__________________)    (_________________WD 6____

Query      321 VTGSYDKSIRIYKTNHGHSREIYHTKRMQHVFQVKYSMDSKYIISGSDDGNVRLWRSKAWERSNVKTTREKNKLEYDEKL 400 
WD40-rpts      ____________)(___________________WD 7__________________)          (_____________

Query      401 KERFRHMPEIKRISRHRHVPQVIKKAQEIKNIELSSIKRREANERRTRKDMPYISERKKQIVGTVHKYEDSGRDRKRRKE 480 
WD40-rpts      ______WD 8__________________)                                                   

Query      481 DDKRDTQEK 489 
WD40-rpts               

8 WD40-repeats found in QUERY=YLL011W (Len=489):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    48-96       7.09  407.40  0.00020       32.5%     44.79
  WD 2:  Seg  8   100-149      7.02  404.67  0.00022       25.0%     55.23
  WD 3:  Seg 12   153-205      3.57  262.19  0.01809       17.5%     33.23
  WD 4:  Seg 16   209-248      7.16  410.39  0.00018       25.0%     55.25
  WD 5:  Seg 20   249-290      5.74  351.70  0.00113       17.5%     49.86
  WD 6:  Seg 24   295-333      9.58  510.32  8.2e-06       35.0%     47.45
  WD 7:  Seg 28   334-376      8.10  449.26  5.5e-05       30.0%     53.45
  WD 8:  Seg 33   387-429      5.66  348.50  0.00125       17.5%     28.09

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   48-96     TKLERMFAKPF---VGQLGY-GHRDGVY----------------AIAKN-----------Y-GSLNKLATGSA-DGVIKYWN--
   WD 2  100-149    -R--------E---EFVSFK-AHYGLVT----------------GLCVTQPRFHDKKPDLK-SQ-NFMLSCSD-DKTVKLWS--
   WD 3  153-205    -D--------D---YSNKNS-SDNDSVTNEEGLIRTFDGESAFQGIDSH-----------R-EN-STFATGG---AKIHLWD--
   WD 4  209-248    -L--------K---PVSDLS-WGADNIT----------------SLKFN-----------QNET-DILASTGS-DNSIVLYD--
   WD 5  249-290    LR--------T---NSPTQKIVQTMRTN----------------AICWN-----------PMEA-FNFVTANE-DHNAYYYD--
   WD 6  295-333    -S--------R---SLNVFK-DHVSAVM----------------DVDFS-----------P-TG-DEIVTGSY-DKSIRIYK--
   WD 7  334-376    TN--------HGHSREIYHT-KRMQHVF----------------QVKYS-----------M-DS-KYIISGSD-DGNVRLWR--
   WD 8  387-429    TT--------R---EKNKLE-YDEKLKE----------------RFRHM-----------P-EI-KRISRHRHVPQVIKKAQEI

   WD40 Template    TG--------E---CLRTLS-GHTSGVT----------------SVSFS-----------P-DG-KRLVSGSE-DGTIKVWD--