Input parameters:

  Query = YKR036C (Len=643)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YKR036C, Len=643):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGSGDTRGESSLVAKPIEIILNKLPHAILAQQQFQKYITSPIYRYLSKLLLFREVAWPESTKDTQKGQVGIFSFQNNYAD 80  
WD40-rpts                                                                                      

Query       81 SATTFRILAHLDEHGYPLPNGAAEKNLPSLFEGFKATVSIIQQRLLLDNVDGATNSDKEKYVQLPDINTGFVNKTYSRID 160 
WD40-rpts                                                                                      

Query      161 LTHLLEDVETNVENLSINKTLEMDELTRLDSMINELESRKLKILERVKHIDSKSTNLENDVTLIKDRINFIEEYNLEADR 240 
WD40-rpts                                                                                      

Query      241 EQSLRKQMEEERSSEASSFTQNEEAISSLCDVESKDTRLKDFYKMPHEKSHDKNRQIISETYSRNTTAFRMTIPHGEHGN 320 
WD40-rpts                                 (_____________WD 1_____________)         (___________

Query      321 SITALDFDTPWGTLCSSSYQDRIVKVWDLNHGIQVGELPGHLATVNCMQIDKKNYNMLITGSKDATLKLWDLNLSREIYL 400 
WD40-rpts      ______WD 2_________________)   (_________________WD 3_________________)         

Query      401 DHSPLKEKTEEIVTPCIHNFELHKDEITALSFDSEALVSGSRDKKIFHWDLTTGKCIQQLDLIFTPTHSDIKMPARSLNN 480 
WD40-rpts                      (______________WD 4______________)                        (_____

Query      481 GACLLGTEAPMIGALQCYNSALATGTKDGIVRLWDLRVGKPVRLLEGHTDGITSLKFDSEKLVTGSMDNSVRIWDLRTSS 560 
WD40-rpts      _____________WD 5_________________)   (________________WD 6_______________)  (__

Query      561 ILDVIAYDLPVSSLDFDGKLITVGANEGGVNVFNMERDEHWMTPEPPHSLDGDELSRRIAIVKYKDGFLINGHNDGDINV 640 
WD40-rpts      ______________WD 7_______________)         (_________________WD 8_______________

Query      641 WTL 643 
WD40-rpts      _) 

8 WD40-repeats found in QUERY=YKR036C (Len=643):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   268-299      3.21  247.18  0.02867       10.0%     10.91
  WD 2:  Seg  4   309-348      7.85  438.96  7.5e-05       27.5%     50.60
  WD 3:  Seg  8   352-391      8.69  473.71  2.6e-05       32.5%     54.17
  WD 4:  Seg 12   417-450      7.20  412.22  0.00017       35.0%     42.68
  WD 5:  Seg 17   475-515      6.38  378.07  0.00050       17.5%     35.21
  WD 6:  Seg 20   519-555      9.04  487.93  1.6e-05       45.0%     51.15
  WD 7:  Seg 24   558-594      5.97  361.37  0.00084       22.5%     51.78
  WD 8:  Seg 27   604-642      7.65  430.54  9.8e-05       25.0%     46.16

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  268-299    ---------SLCDVESKDTRL-KDFY-KMPHEKSHDKNRQIIS
   WD 2  309-348    -FRMTI-PHGEHGNSITALDFDTPWG-TLCSSSYQDRIVKVWD
   WD 3  352-391    -GIQVG-ELPGHLATVNCMQI-DKKNYNMLITGSKDATLKLWD
   WD 4  417-450    ----IH-NFELHKDEITALSF---DS-EALVSGSRDKKIFHWD
   WD 5  475-515    ARSLNNGACLLGTEAPMIGAL-QCYN-SALATGTKDGIVRLWD
   WD 6  519-555    -GKPVR-LLEGHTDGITSLKF---DS-EKLVTGSMDNSVRIWD
   WD 7  558-594    -TSSIL-DVIAYDLPVSSLDF---DG-KLITVGANEGGVNVFN
   WD 8  604-642    -PEPPH-SLDGDELSRRIAIV-KYKD-GFLINGHNDGDINVWT

   WD40 Template    TGECLR-TLSGHTSGVTSVSF-SPDG-KRLVSGSEDGTIKVWD