Input parameters:

  Query = YKL213C (Len=715)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YKL213C, Len=715):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGYQLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 80  
WD40-rpts       (_________________WD 1________________)   (_________________WD 2_______________

Query       81 VPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADK 160 
WD40-rpts      _)      (________________WD 3_______________)(__________________WD 4____________

Query      161 TIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGED 240 
WD40-rpts      _____)(_________________WD 5_________________)   (________________WD 6__________

Query      241 RTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRWASEDEINELSTQVEKSTISSKTIEFD 320 
WD40-rpts      ______)   (________________WD 7________________)                                

Query      321 ESKLSPYEILQSPGRKEGQIVVVKSPQGTIEAHQFSNSSWKKVGDVVGAGATGNDKKIEFEGKTYDYVFDVDIEDGKPPL 400 
WD40-rpts                                                                                      

Query      401 KLPINVSDNPYTAADNFLARYELPMSYRDQVVQFILKNTNGISLDQPNDNASSSAVSPSKTSVMKVLPVKQYLIMENYNP 480 
WD40-rpts                                           (_________________WD 8________________)    

Query      481 DTIFNGIVKINSNEKTFDDEILAQIGGALHDIDESWELLLSFANTIRSNWEIKTPAYDIVRLIVKKLPYSSDIKDYIEEG 560 
WD40-rpts                                                                                      

Query      561 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDL 640 
WD40-rpts                                                                                      

Query      641 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFANSVTWLANIKRSYGNVPRFKDIFDDLS 715 
WD40-rpts                                                                                 

8 WD40-repeats found in QUERY=YKL213C (Len=715):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-40       7.54  426.33  0.00011       35.0%     50.80
  WD 2:  Seg  5    44-82       6.07  365.47  0.00074       15.0%     38.11
  WD 3:  Seg  8    89-125      7.25  413.98  0.00016       42.5%     46.52
  WD 4:  Seg 12   126-166      8.86  480.59  2.1e-05       27.5%     51.57
  WD 5:  Seg 16   167-206      7.70  432.70  9.2e-05       35.0%     51.17
  WD 6:  Seg 20   210-247      8.31  458.03  4.2e-05       40.0%     54.93
  WD 7:  Seg 24   251-288      5.90  358.34  0.00092       17.5%     53.52
  WD 8:  Seg 38   438-476      2.80  230.29  0.04796       10.0%     29.90

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-40     GYQLSATLKG-HDQDVRDVVA-VDDSK-VASVSRDGTVRLWS
   WD 2   44-82     -QWLGTVVYT-GQGFLNSVCY-DSEKELLLFGGKDTMINGVP
   WD 3   89-125    -EDPLYTLIG-HQGNVCSLSF-QDG--VVISGSWDKTAKVWK
   WD 4  126-166    EGSLVYNLQA-HNASVWDAKVVSFSENKFLTASADKTIKLWQ
   WD 5  167-206    NDKVIKTFSGIHNDVVRHLAV-VDDGH-FISCSNDGLIKLVD
   WD 6  210-247    -GDVLRTYEG-HESFVYCIKL-LPNGD-IVSCGEDRTVRIWS
   WD 7  251-288    -GSLKQVITL-PAISIWSVDC-MSNGD-IIVGSSDNLVRIFS
   WD 8  438-476    NTNGI-SLDQ-PNDNASSSAV-SPSKTSVMKVLPVKQYLIME

   WD40 Template    TGECLRTLSG-HTSGVTSVSF-SPDGKRLVSGSEDGTIKVWD