Input parameters:

  Query = YKL121W (Len=852)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YKL121W, Len=852):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFKSKTSTLSYDETPNSNEGDRNATPVNPKEKSQTKHLNIPGDRSRHSSIADSKRSSSRYDGGYSADIIPAQLRFIDNID 80  
WD40-rpts                                                                                (_____

Query       81 YGTRLRKTLHRNSVVSNGYNKLSENDRWYFDLFDRKYFENYLEEPTYIKIFKKKEGLEQFDRMFLAQELKIPDVYKSTTY 160 
WD40-rpts      ____________WD 1_________________)                                              

Query      161 QGEPAVANSELFKNSICCCTFSHDGKYMVIGCKDGSLHLWKVINSPVKRSEMGRSEKSVSASRANSLKIQRHLASISSHN 240 
WD40-rpts           (_______________WD 2_______________)                            (__________

Query      241 GSISSNDLKPSDQFEGPSKQLHLYAPVFYSDVFRVFMEHALDILDANWSKNGFLITASMDKTAKLWHPERKYSLKTFVHP 320 
WD40-rpts      _____WD 3_______________)    (________________WD 4________________)  (__________

Query      321 DFVTSAIFFPNDDRFIITGCLDHRCRLWSILDNEVSYAFDCKDLITSLTLSPPGGEYTIIGTFNGYIYVLLTHGLKFVSS 400 
WD40-rpts      _______WD 5_________________)  (_________________WD 6_________________)         

Query      401 FHVSDKSTQGTTKNSFHPSSEYGKVQHGPRITGLQCFFSKVDKNLRLIVTTNDSKIQIFDLNEKKPLELFKGFQSGSSRH 480 
WD40-rpts                      (___________________WD 7___________________)   (________________

Query      481 RGQFLMMKNEPVVFTGSDDHWFYTWKMQSFNLSAEMNCTAPHRKKRLSGSMSLKGLLRIVSNKSTNDECLTETSNQSSSH 560 
WD40-rpts      ___WD 8__________________)(_______________WD 9______________)          (________

Query      561 TFTNSSKNVLQTQTVGSQAIKNNHYISFHAHNSPVTCASIAPDVAIKNLSLSNDLIFELTSQYFKEMGQNYSESKETCDN 640 
WD40-rpts      ______WD10_____________)________________WD11________________)   (_______________

Query      641 KPNHPVTETGGFSSNLSNVVNNVGTILITTDSQGLIRVFRTDILPEIRKKIIEKFHEYNLFHLEAAGKINNHNNDSILEN 720 
WD40-rpts      __________WD12_________________________)                        (_______________

Query      721 RMDERSSTEDNEFSTTPPSNTHNSRPSHDFCELHPNNSPVISGMPSRASAIFKNSIFNKSNGSFISLKSRSESTSSTVFG 800 
WD40-rpts      _________________WD13_______________________________)                           

Query      801 PHDIPRVSTTYPKLKCDVCNGSNFECASKNPIAGGDSGFTCADCGTILNNFR 852 
WD40-rpts                                                          

13 WD40-repeats found in QUERY=YKL121W (Len=852):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    75-114      4.95  318.96  0.00313       10.0%      0.46
  WD 2:  Seg  3   166-201      8.19  452.92  4.9e-05       25.0%     48.59
  WD 3:  Seg  7   230-265      4.90  317.25  0.00330       12.5%     38.90
  WD 4:  Seg 11   270-307      7.54  426.28  0.00011       25.0%     43.53
  WD 5:  Seg 15   310-349      6.60  387.37  0.00037       25.0%     53.25
  WD 6:  Seg 19   352-391      6.04  364.09  0.00077       22.5%     56.02
  WD 7:  Seg 25   417-460      5.21  329.72  0.00224       17.5%     38.31
  WD 8:  Seg 28   464-506      6.88  398.93  0.00026       20.0%     50.99
  WD 9:  Seg 32   507-541      4.18  287.39  0.00831        7.5%     32.18
  WD10:  Seg 36   552-584      4.43  297.85  0.00601       10.0%     32.55
  WD11:  Seg 39   583-621      6.49  382.94  0.00043       25.0%     50.69
  WD12:  Seg 43   625-680      4.56  303.06  0.00512       20.0%     18.31
  WD13:  Seg 46   705-773      3.59  263.02  0.01763        7.5%     14.51

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   75-114    FIDN----ID-----------------------------YGTRLRKTLH----RNSVVS-N-----------------GY-NKLSENDRWYFDLFD
   WD 2  166-201    --------VA-----------------------------NSELFKNSIC----CCTFSH-D-----------------GK-YMVIGCKDGSLHLWK
   WD 3  230-265    -QRH----LA-----------------------------SISSHNGSIS----SNDLKP-S-----------------DQ-FEGP---SKQLHLYA
   WD 4  270-307    -SDV----FR-----------------------------VFMEHALDIL----DANWSK-N-----------------G--FLITASMDKTAKLWH
   WD 5  310-349    -RKY----SL-----------------------------KTFVHPDFVT----SAIFFPND-----------------DR-FIITGCLDHRCRLWS
   WD 6  352-391    -DNE----VS-----------------------------YAFDCKDLIT----SLTLSP-P----------------GGE-YTIIGTFNGYIYVLL
   WD 7  417-460    HPSSEYGKVQ-----------------------------HGPRITGLQC----FFSKVD-K-----------------NL-RLIVTTNDSKIQIFD
   WD 8  464-506    -KKP----LE-----------------------------LFKGFQSGSSRHRGQFLMMK-N-----------------EP-VVFTGSDDHWFYTWK
   WD 9  507-541    ---------M-----------------------------QSFNLSAEMN----CTAPHR-K-----------------KR-LSGSMSLKGLLRIVS
   WD10  552-584    ----------------------------------------ETSNQSSSH----TFTNSS-K-----------------NV-LQTQTVGSQAIKNNH
   WD11  583-621    --NH----YI-----------------------------SFHAHNSPVT----CASIAP-D-----------------VAIKNLSLSNDLIFELTS
   WD12  625-680    -KEM----GQ-----------------------------NYSESKETCD----NKPNHP-VTETGGFSSNLSNVVNNVGT-ILITTDSQGLIRVFR
   WD13  705-773    AAGK----INNHNNDSILENRMDERSSTEDNEFSTTPPSNTHNSRPSHD----FCELHP-N-----------------NS-PVISGMPSRASAIFK

   WD40 Template    TGEC----LR-----------------------------TLSGHTSGVT----SVSFSP-D-----------------GK-RLVSGSEDGTIKVWD