Input parameters:

  Query = YKL021C (Len=468)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YKL021C, Len=468):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLLNTTYTVFIFFLLRIIKFKIKAENFLEHEKLKTHGTSSRKDPKGQVKNSCRKMSAIGDKNQFRIIVGSYEHNILCLSL 80  
WD40-rpts                                   (______________________WD 1______________________) 

Query       81 DIPNQKENDAAKTPHFMPIFHFQAHSLSIKCLAVSRRYLVSGSNDEHIRIYDLQKRKELGTLLSHQGSITALQFSHPASS 160 
WD40-rpts                     (________________WD 2_______________)   (________________________

Query      161 SEDAAVSKGSKNSKWLLSASEDHKIMVWRVKDWETVGTLKGHTARVNDVDIHPTNRIAISVSDDHSIRLWNLMTLRNAAV 240 
WD40-rpts      WD 3________________________)   (_________________WD 4________________)      (__

Query      241 LKLRKYNTNGTCVRWLGAKGDYFAVGLRDRVLIYETGSAKVFKEIVFQRKTLMHIETHILPFDNKEYLSVGISDGNVHFY 320 
WD40-rpts      ______________WD 5________________)   (___________________WD 6__________________

Query      321 PCEELFEKVEENEKQEDDDDKEDISPAFSLLGHTNRIKDFKFYTNEFGTYLVTIGSDGKIVVWDMSTKEQVAVYDCGERL 400 
WD40-rpts      )                      (__________________WD 7_________________)   (____________

Query      401 NCLTLCDESIEKYNTMKKRDAETADIGDQSEVESDTEELKKIMFGEKKKLNKKKRKQLKKSKVSVELE 468 
WD40-rpts      __WD 8_____________)                                                

8 WD40-repeats found in QUERY=YKL021C (Len=468):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    30-79       4.65  306.81  0.00456       17.5%     37.60
  WD 2:  Seg  7    96-132      6.13  367.70  0.00069       25.0%     51.70
  WD 3:  Seg 11   136-189      7.78  435.85  8.3e-05       40.0%     56.43
  WD 4:  Seg 15   193-231     10.19  535.50  3.8e-06       35.0%     57.22
  WD 5:  Seg 19   238-275      5.11  325.84  0.00253       15.0%     47.06
  WD 6:  Seg 23   279-321      7.13  409.13  0.00019       10.0%     57.04
  WD 7:  Seg 28   344-384      7.73  433.93  8.8e-05       35.0%     50.59
  WD 8:  Seg 32   388-420      3.16  245.30  0.03037       12.5%     27.64

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   30-79     HEKLKTHGTSSRKDPKGQVK---------------NS--CRKMSAIGDKNQFRIIVGSYEHNILCLS
   WD 2   96-132    FMPIFHFQAHSLSIKCLAVS---------------R----R-----------YLVSGSNDEHIRIYD
   WD 3  136-189    RKELGTLLSHQGSITALQFSHPASSSEDAAVSKGSKN--SK-----------WLLSASEDHKIMVWR
   WD 4  193-231    WETVGTLKGHTARVNDVDIH---------------PT--NR-----------IAISVSDDHSIRLWN
   WD 5  238-275    AAVLKLRKYNTNGTCVRWLG---------------AK--GD-----------YFAVGLRDRVL-IYE
   WD 6  279-321    AKVFKEIVFQRKTLMHIETH-----------ILPFDN--KE-----------YLSVGISDGNVHFYP
   WD 7  344-384    ISPAFSLLGHTNRIKDFKFY---------------TNEFGT-----------YLVTIGSDGKIVVWD
   WD 8  388-420    KEQVAVYDCGER-LNCLTLC---------------DE------------------SIEKYNTMKKRD

   WD40 Template    GECLRTLSGHTSGVTSVSFS---------------PD--GK-----------RLVSGSEDGTIKVWD