Input parameters:

  Query = YKL001C (Len=202)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YKL001C, Len=202):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATNITWHPNLTYDERKALRKQDGCTIWLTGLSASGKSTIACALEQLLLQKNLSAYRLDGDNIRFGLNKDLGFSEKDRNE 80  
WD40-rpts                                                        (_____________________________

Query       81 NIRRISEVSKLFADSCAISITSFISPYRVDRDRARELHKEAGLKFIEIFVDVPLEVAEQRDPKGLYKKAREGVIKEFTGI 160 
WD40-rpts      ______________________WD 1___________________________________________________)  

Query      161 SAPYEAPKAPELHLRTDQKTVEECATIIYEYLISEKIIRKHL 202 
WD40-rpts                                                

1 WD40-repeats found in QUERY=YKL001C (Len=202):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    51-158      2.78  229.57  0.04901       20.0%     19.29

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   51-158    KNLSAYRLDGDNIRFGLNKDLGFSEKDRNENIRRISEVSKLFADSCAISITSFISPYRVDRDRARELHKEAGLKFIEIFVDVPLEVAEQRDPKGLYKKAREGVIKEFT

   WD40 Template    TGECLRTLSG------------HT---------------------SGVTSVSFSPDG-------------------KRLVSGS------EDGT----------IKVWD