Input parameters:

  Query = YJL112W (Len=714)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YJL112W, Len=714):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSVNDQITHIGKTLSTTASAFLNYQKSNSNTQDVLTNNGPYKNLLSNTVNNASSTSYFYKRTEHGRFVKNASNTFEDIYS 80  
WD40-rpts                                                                                      

Query       81 KTRRGDVFRNKFTDNKTCFRMLTYISDDLLNEIPTKEGLKSDADGKLLTEGGENENLRKNASKKETSLFQGFKSYLPIAE 160 
WD40-rpts                                                                                      

Query      161 LAIENTERLNYDTNGTSGTVGAKDVMSKTNERDEIHTELPNFQDSFLIPPGVETKKISSSYSPSALKSFSQTLVNSLEFL 240 
WD40-rpts                                                                                      

Query      241 NIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEEYGLEVIEANSDENAEDDGMSER 320 
WD40-rpts                                                                                      

Query      321 KALKNDAIRNEGVTTESISSEASNLPPRRRQQLRDDNSLNRLGAFYSKSKKRHRKSFPTFQQLYEPGTKIGSIMSTHDDF 400 
WD40-rpts                                (_________________WD 1________________)  (____________

Query      401 LTCLDFDAPFGTLCTAGYLDHTVKIWDLSKQNKIGELAGHLATINCMQINRDYGTLVTGGRDAALKLWNLNLAQQLYQET 480 
WD40-rpts      _____WD 2_________________)   (_________________WD 3________________)           

Query      481 QNLTSPTNHIDSPCVHTFEAHTDEVTALSLDPSFLVSGSQDRTIRQWDLRSGKCLQTIDLSFANVLTTSTNVDLSKSTLL 560 
WD40-rpts                 (________________WD 4_______________)                         (______

Query      561 TQRNERPSIGALQSFDAALATGTKDGVVRLWDLRSGKVIRTLKGHTDAITSLKFDSACLVTGSYDRTVRIWDLRTGLLNK 640 
WD40-rpts      ___________WD 5________________)   (________________WD 6_______________)(_______

Query      641 FHAYSAPVLSLDLFQENAAVVVADEPSVQIYDSEKDESWSCVEQGNETSVSTVKYKENYMVEGRENGDVNIWAV 714 
WD40-rpts      __________WD 7_________________)(__________________WD 8_________________) 

8 WD40-repeats found in QUERY=YJL112W (Len=714):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   347-385      4.82  313.80  0.00367       12.5%     38.89
  WD 2:  Seg  5   388-427      8.03  446.21  6.0e-05       30.0%     43.12
  WD 3:  Seg  8   431-469      9.52  507.90  8.9e-06       25.0%     53.67
  WD 4:  Seg 12   492-528      7.71  433.11  9.1e-05       45.0%     42.19
  WD 5:  Seg 17   554-592      8.19  453.10  4.9e-05       17.5%     37.29
  WD 6:  Seg 20   596-632      8.90  482.30  2.0e-05       47.5%     52.65
  WD 7:  Seg 24   633-672      6.51  383.60  0.00042       12.5%     49.22
  WD 8:  Seg 28   673-713      6.01  362.89  0.00080       20.0%     47.93

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  347-385    -PR---RRQQLRDDNSLNRLGAF-YSKSKKRHRKSFPTFQQLYE
   WD 2  388-427    -TK---IGSIMSTHDDFLTCLDFDAPFGTLCTAGYLDHTVKIWD
   WD 3  431-469    -QN---KIGELAGHLATINCMQI-NRDYGTLVTGGRDAALKLWN
   WD 4  492-528    -SP---CVHTFEAHTDEVTALSL-DPS--FLVSGSQDRTIRQWD
   WD 5  554-592    -LS---KSTLLTQRNERPSIGAL-QSFDAALATGTKDGVVRLWD
   WD 6  596-632    -GK---VIRTLKGHTDAITSLKF---DSACLVTGSYDRTVRIWD
   WD 7  633-672    LRT--GLLNKFHAYSAPVLSLDL-FQENAAVVVAD-EPSVQIYD
   WD 8  673-713    SEKDESWSCVEQGNETSVSTVKY-KEN--YMVEGRENGDVNIWA

   WD40 Template    TGE---CLRTLSGHTSGVTSVSF-SPDGKRLVSGSEDGTIKVWD