Input parameters:

  Query = YIL046W (Len=640)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YIL046W, Len=640):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRRERQRMMSFEDKDKDDLDNSNSNNSSEMTDTAMMPPLKRLLITGSSDDLAQGSSGKKKMTMATRSPSSSPDLATNDSG 80  
WD40-rpts                                                                                      

Query       81 TRVQPLPEYNFTKFCYRHNPDIQFSPTHTACYKQDLKRTQEINANIAKLPLQEQSDIHHIISKYSNSNDKIRKLILDGIL 160 
WD40-rpts                                                                                      

Query      161 STSCFPQLSYISSLVTHMIKIDFISILPQELSLKILSYLDCQSLCNATRVCRKWQKLADDDRVWYHMCEQHIDRKCPNCG 240 
WD40-rpts                                                                                      

Query      241 WGLPLLHMKRARIQQNSTGSSSNADIQTQTTRPWKVIYRERFKVESNWRKGHCRIQEFKGHMDGVLTLQFNYRLLFTGSY 320 
WD40-rpts                                                 (____________________WD 1____________

Query      321 DSTIGIWDLFTGKLIRRLSGHSDGVKTLYFDDRKLITGSLDKTIRVWNYITGECISTYRGHSDSVLSVDSYQKVIVSGSA 400 
WD40-rpts      _______)   (________________WD 2_______________)   (________________WD 3________

Query      401 DKTVKVWHVESRTCYTLRGHTEWVNCVKLHPKSFSCFSCSDDTTIRMWDIRTNSCLKVFRGHVGQVQKIIPLTIKDVENL 480 
WD40-rpts      _______)  (_________________WD 4________________)   (__________________WD 5_____

Query      481 ATDNTSDGSSPQDDPTMTDGADESDTPSNEQETVLDENIPYPTHLLSCGLDNTIKLWDVKTGKCIRTQFGHVEGVWDIAA 560 
WD40-rpts      _____________)     (_________________WD 6________________)   (________________WD

Query      561 DNFRIISGSHDGSIKVWDLQSGKCMHTFNGRRLQRETQHTQTQSLGDKVAPIACVCIGDSECFSGDEFGCVKMYKFDLND 640 
WD40-rpts       7_______________)   (________________________WD 8________________________)     

8 WD40-repeats found in QUERY=YIL046W (Len=640):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   284-328      6.71  391.72  0.00033       32.5%     52.17
  WD 2:  Seg  5   332-368      9.02  487.41  1.7e-05       45.0%     53.97
  WD 3:  Seg  9   372-408      8.51  466.26  3.2e-05       47.5%     49.50
  WD 4:  Seg 13   411-449      9.46  505.48  9.6e-06       37.5%     51.15
  WD 5:  Seg 17   453-494      7.29  415.97  0.00015       20.0%     31.81
  WD 6:  Seg 20   500-538      7.92  441.76  6.9e-05       25.0%     45.80
  WD 7:  Seg 23   542-578      8.97  485.17  1.8e-05       50.0%     52.79
  WD 8:  Seg 27   582-635      5.49  341.38  0.00156       22.5%     38.40

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  284-328    VESNWRKGHCRIQEFKGHMDGVLTL---QF--NY---------------RLLFTGSYDSTIGIWD
   WD 2  332-368    -GK-------LIRRLSGHSDGVKTL---YF--DD---------------RKLITGSLDKTIRVWN
   WD 3  372-408    -GE-------CISTYRGHSDSVLSV-----DSYQ---------------KVIVSGSADKTVKVWH
   WD 4  411-449    -SR-------TCYTLRGHTEWVNCV---KLHPKS---------------FSCFSCSDDTTIRMWD
   WD 5  453-494    -NS-------CLKVFRGHVGQVQKIIPLTIKDVE---------------NLATDNTSDGSSPQDD
   WD 6  500-538    -GA-------DESDTPSNEQETVLD---ENIPYP---------------THLLSCGLDNTIKLWD
   WD 7  542-578    -GK-------CIRTQFGHVEGVWDI---A--ADN---------------FRIISGSHDGSIKVWD
   WD 8  582-635    -GK-------CMHTFNGRRLQRETQ---HTQTQSLGDKVAPIACVCIGDSECFSGDEFGCVKMYK

   WD40 Template    TGE-------CLRTLSGHTSGVTSV---SFSPDG---------------KRLVSGSEDGTIKVWD