Input parameters:

  Query = YHR196W (Len=575)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YHR196W, Len=575):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGSSLDLVASFSHDSTRFAFQASVAQKNNVDIYPLNETKDYVVNSSLVSHIDYETNDMKVSDVIFFGWCSDLIDTQSSNI 80  
WD40-rpts                                                                                  (___

Query       81 KRKLDEDEGTGESSEQRCENFFVNGFPDGRIVVYSSNGKDIVNIIKNKKEILGADTDESDIWILDSDKVVKKLQYNNSKP 160 
WD40-rpts      ______________WD 1________________)                                             

Query      161 LKTFTLVDGKDDEIVHFQILHQNGTLLVCIITKQMVYIVDPSKRRPSTKYSFEISDAVACEFSSDGKYLLIANNEELIAY 240 
WD40-rpts                                                 (________________WD 2________________

Query      241 DLKEDSKLIQSWPVQVKTLKTLDDLIMALTTDGKINNYKIGEADKVCSIVVNEDLEIIDFTPINSKQQVLISWLNVNEPN 320 
WD40-rpts      )                                                                               

Query      321 FESISLKEIETQGYITINKNEKNNADEADQKKLEEKEEEAQPEVQHEKKETETKINKKVSKSDQVEIANILSSHLEANST 400 
WD40-rpts                                                                                      

Query      401 EILDDLMSGSWTEPEIKKFILTKINTVDHLSKIFLTISKSITQNPWNEENLLPLWLKWLLTLKSGELNSIKDKHTKKNCK 480 
WD40-rpts                                                                                      

Query      481 HLKSALRSSEEILPVLLGIQGRLEMLRRQAKLREDLAQLSMQEGEDDEIEVIEHSNVISNPLQDQASPVEKLEPDSIVYA 560 
WD40-rpts                                                                                      

Query      561 NGESDEFVDASEYKD 575 
WD40-rpts                     

2 WD40-repeats found in QUERY=YHR196W (Len=575):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7    77-115      3.56  261.77  0.01832       20.0%     23.44
  WD 2:  Seg 17   204-241      3.59  262.93  0.01768       22.5%     37.38

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   77-115    SSNIKRKLDEDEGTGESSEQRCENFFVNGFPDGRIVVYS
   WD 2  204-241    RRPSTKYSFEISDAVACEFSSDGKYLLIAN-NEELIAYD

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD