Input parameters:

  Query = YHL038C (Len=630)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YHL038C, Len=630):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVNWQTLFMVSLRRQGSSSRYRYKFNMENITHQVFPRCKQAFKKTNLSYEYCDLEGVLYNISLTDLQKLLLRDINAPREH 80  
WD40-rpts                                                                                (_____

Query       81 AFKIVRTDLTQKSSKKRIQHWERIAPMFDHPLSLYEKLFSEMDEDFKPSFEWQQLIRVRCKDDKLKLQRVIWPKSIFSNF 160 
WD40-rpts      ___________________________________WD 1_______________________________________) 

Query      161 CRGIGVKKSTYDRLLEQNNGEVPMFVNPANAKPLPLFQVSDEAMIGEFDGIGIFPYFVDKHREFFVTEVDKLKTKIASPL 240 
WD40-rpts                                                                                      

Query      241 CTLNERKRIEKANAGRILANEEGKPFYLDANSATTRIAGGNVVTLKQLLERSVSHKTLWSKQSNKDRTCPGDILRATILS 320 
WD40-rpts                                                                                      

Query      321 NDFSIRQLRAEFCKNFILYNIFTILQRNKKSIRSFSGNDNAPSFQFSWNVWDSYIWKQYQETESMKIPTDQASLINYKTK 400 
WD40-rpts                                                                                      

Query      401 YDSFLHDLQTYSALVISEMKWNQFSIFQNDETTLSRFEHITLILQTVLTKSKMIRIFQPNLYKFMQDDLRPTLMELVGFT 480 
WD40-rpts                                                                                      

Query      481 ESINATIEPGFANEQSLQSANGLKKLANQLLYFEQEIYGEKFRVNRPIQLRPITLSANYKIVILDKKNAIPEIFQTLLKF 560 
WD40-rpts                                                                                      

Query      561 MTQITTYFVKDLSEVELHGHMHCIDKKMLDKSKFMYLYEEKSNEEVKAASPQKEKIVDNIIGLLSNDEEH 630 
WD40-rpts                                                                            

1 WD40-repeats found in QUERY=YHL038C (Len=630):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    75-159      3.45  257.05  0.02119       10.0%     -5.02

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   75-159    NAPREHAFKIVRTDLTQKSSKKRIQHWERIAPMFDHPLSLYEKLFSEMDEDFKPSFEWQQLIRVRCKDDKLKLQRVIWPKSIFSN

   WD40 Template    TGECLRTLSGHT------------------SGVTSVSFS-------PDGKRLVSG----------SEDGTIK----VWD------