Input parameters:

  Query = YGR223C (Len=448)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YGR223C, Len=448):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDVRRPIREAVNNRRKPKFLSVSFNQDDSCFSVALENGFRIFNTDPLTSKLSKTFKESATNQSRGTGIGYTRMLYRTNYI 80  
WD40-rpts             (_______________WD 1_______________)                                     

Query       81 ALVGGGKRPRHALNKLIIWDDLLQKETITLKFMSSIKDVFLSRIHIVVVLENTIEIFQFQTNPQRICPILDIPPNGSVDY 160 
WD40-rpts                          (________________WD 2________________)                      

Query      161 VVCSSKHLQSQASQSQSKILEIIAFPSNKCVGQIQVADLSQIKYNSQNPKESALLPTSIIKAHKNPIKLVRLNRQGTMVA 240 
WD40-rpts                                            (_________________________WD 3____________

Query      241 TCSVQGTLIRIFSTHNGTLIKEFRRGVDKADIYEMSFSPNGSKLAVLSNKQTLHIFQIFETTNTETNTPDHSRANGSSHP 320 
WD40-rpts      ____________)   (__________________WD 4_________________)(___________________WD 

Query      321 LKNYIPKGLWRPKYLDSVWSICNAHLKNPIFDAHRNDNSGDVTHDNEFYKDRCRIGWCQDSNNREQDDSLVLVWQNSGIW 400 
WD40-rpts      5__________________)         (____________________WD 6____________________)     

Query      401 EKFVILEKEQQDSSKTHYSLNESLRNEDTKSAGEPTRWELVRESWREL 448 
WD40-rpts                                                      

6 WD40-repeats found in QUERY=YGR223C (Len=448):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     8-43       4.37  295.22  0.00652       17.5%     43.84
  WD 2:  Seg  7   101-138      2.93  235.78  0.04060       17.5%     39.66
  WD 3:  Seg 16   199-253      5.95  360.63  0.00086       17.5%     52.52
  WD 4:  Seg 20   257-297      6.98  402.95  0.00023       22.5%     55.74
  WD 5:  Seg 24   298-340      3.16  245.17  0.03049       15.0%     -4.19
  WD 6:  Seg 25   350-395      3.72  268.25  0.01501       12.5%     11.42

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    8-43     -------------------REAV---NN-RRK--PKFLSVSFNQDDS-------------CFSVALENG--FRIFN
   WD 2  101-138    DLL--------------QK--ET---ITLKFM--SSIKDVFLSRIHI-------------VVVL---ENT-IEIFQ
   WD 3  199-253    LSQIKYNSQNPKESALLPT--SI---IK-AHK--NPIKLVRLNRQGT-------------MVATCSVQGTLIRIFS
   WD 4  257-297    -GT--------------LI--KE---FR-RGVDKADIYEMSFSPNGS-------------KLAVLSNKQT-LHIFQ
   WD 5  298-340    IFE--------------TT--NTETNTP-DHS--RANGSSHPLKNYI-------------PKGLWRPKYL-DSVWS
   WD 6  350-395    --------------------------IF-DAH--RNDNSGDVTHDNEFYKDRCRIGWCQDSNNREQDDSL-VLVWQ

   WD40 Template    TGE--------------CL--RT---LS-GHT--SGVTSVSFSPDGK-------------RLVSGSEDGT-IKVWD