Input parameters:

  Query = YGR117C (Len=476)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YGR117C, Len=476):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MADNSTSRFYTNLLIANYLKHNGLEDTLAAFIRETALPLSALEKSDSSNSNVGEIPLEDLQSVVEDRIYYKRRSFKDRFK 80  
WD40-rpts                                                                                      

Query       81 TLSINDDLAPIDNAKYGIQPWNHSLKFSIDVKLNKSLPKDTLFISATFTEDSKYILLSSATGYLVIYDIEKATSKSFKIN 160 
WD40-rpts                                      (_______________WD 1_______________)            

Query      161 EKVKSIVKLYGPIGSSGYQYVCPMNGSFYLLNNDFELVNNAVWKIHARMITHIKICNVTESSWFVITSGMDNFLRLSLLE 240 
WD40-rpts                                      (____________________WD 2____________________)  

Query      241 IKNGNTFLTKLSEIKLASNCTSLNVIANGDGNGQNSFSVFLTRAEYTHIACYSIIDAKNLVHSYNIALNNAEFSTYAFNI 320 
WD40-rpts                                                                                      

Query      321 RDVMAVDYVHSNTKDTIGLSPSTMLVVATSHKPYMRLILVEIPMNTGHPKAMKLDKVQTYYDKILRNFATEIYQDDFSLP 400 
WD40-rpts                                                                                      

Query      401 ILGKLESSNGVLVGNDEGIYSVDLMTGDSRILNIPGEANSLHDRIKCMDISKDQMRMVAGTSTKSIYILNVIRNAQ 476 
WD40-rpts                              (____________________WD 3____________________)      

3 WD40-repeats found in QUERY=YGR117C (Len=476):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   113-148      3.77  270.42  0.01404       20.0%     29.24
  WD 2:  Seg  9   193-238      3.42  255.93  0.02193       10.0%     41.97
  WD 3:  Seg 23   425-470      4.65  306.82  0.00456       20.0%     46.09

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  113-148    LNKSL-------------PKDTLFISAT---FTEDSKYILLSSATGYLVIYD
   WD 2  193-238    NDFELVNNAVWK------IHARMITHIKICNVTESSWFVITSGMDNFLRLSL
   WD 3  425-470    MTGDS---RILNIPGEANSLHDRIKCMD---ISKDQMRMVAGTSTKSIYILN

   WD40 Template    TGECL---RTLS------GHTSGVTSVS---FSPDGKRLVSGSEDGTIKVWD