Input parameters:

  Query = YGL081W (Len=320)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YGL081W, Len=320):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGDIRTFVFAIEDTETTQGLCKTIGRSSSFDQNSLCKPYNLYFDEPELSRQHAVLCIKTPIPKIEGVPSIEQLRICIRDL 80  
WD40-rpts                                                                                      

Query       81 NNKTGTVNLVSDGPNDEIDLKNGDAFGLIAIDNHPFRDNHHLAAKLIFRIELEYFDEAREIVKCTITNVTFGKNNTVSSF 160 
WD40-rpts                                                                                      

Query      161 PIHSATSTEDSDSSWYGLSEASTQTEVADECHETNTILTRGGRFSILSLRKRGSKQDQKICSNFDRKIHETSSFEEEIEV 240 
WD40-rpts                                             (___________________WD 1_________________

Query      241 CTDTDTTEEKEEEEEKEEGDDEEGEIELEIIRVKRIKGRTKIKKTLTCFSKNKKIITPQHSNSMWLLLIVILIFDRLLSN 320 
WD40-rpts      _)                                                                              

1 WD40-repeats found in QUERY=YGL081W (Len=320):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   200-242      2.90  234.42  0.04231       22.5%     14.46

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  200-242    RGGRFSILSLRKRGSKQDQKICSNFDRKIHETSSFEEEIEVCT

   WD40 Template    TGECLRTLSGHTSGVTSV---SFSPDGKRLVSGSEDGTIKVWD