Input parameters:

  Query = Y94H6A.5b (Len=871)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y94H6A.5b, Len=871):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASDDEEDFTQLQINQNRKHKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVI 80  
WD40-rpts                                                                 (____________________

Query       81 PMLQKLKRRDTTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHENPDILLATPGRLLHVIVE 160 
WD40-rpts      _______________________WD 1__________________________________________)          

Query      161 MDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRIPESRQTLLFSATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSM 240 
WD40-rpts                                                                                      

Query      241 VFCMCRPDEKLFALLHLCRRMDRENKQTVVFCATMKHVEYVVGILHRAGIDCSFVYSQLDATARKMNIQKFHEKQNNILV 320 
WD40-rpts                                                                                      

Query      321 VTDVAARGVDIPLLDTVINLHFPPKAKLFVHRVGRVARAGRSGTAISLIANDELPYLTDLFMFLGKPINFASDKSEYKED 400 
WD40-rpts                                                                                      

Query      401 ETLIGRVPDSIVSLETEFFHSIHDNNEDMQDLRQKATNAMMKYTRTRPPPSAESARRVKQDIRTDSVECAPHPFLKADGD 480 
WD40-rpts                                                                                      

Query      481 KQSNDILNKISQYKSRNTIFEMNKSQKSQALAVMQAKRKAHEPRISTVTEEKRKQKEEKEQQQKSTDIAVEIAEKTVENA 560 
WD40-rpts                                                                                      

Query      561 GEDELAEVFGTVIGSTKHTEKSEEKGGKKRKIGTGKRIDRAEQMKFEREKHYVPYMSSDHVAERHLALDTVDFARQAEGA 640 
WD40-rpts                                                                                      

Query      641 SVDIIMDDDRGMYQQKHGQRWDRRLKKYVGLSGGNEPANKKIRTEDGTWLPASYKTGKYEDWKQKQKIGFKKSDGGGDDG 720 
WD40-rpts                                                                                      

Query      721 DNEGSGGMDRKRKWKMEKPKGGPKHSELKNKEQILKLKFMKLIKDQNILSLRIRNRFLRVAVSKSNSKTTWSIAVSRISK 800 
WD40-rpts                                                                                      

Query      801 RRPSILDEVEPAVLVEEPVEELVAELVEEAPEGLAEEPGEAENSETGVDFLIFFFVIFWKFLLIFSLFVIR 871 
WD40-rpts                                                                             

1 WD40-repeats found in QUERY=Y94H6A.5b (Len=871):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    60-150      3.11  243.30  0.03228       20.0%     38.31

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   60-150    DGKDVVAMSRTGSGKTAAFVIPMLQKLKRRDTTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHENPDILLAT

   WD40 Template    TGECLRTLSGHTS--------------------GVTSVSFSPD--------------------GKRLVSGSED-----------GTIKVWD