Input parameters:

  Query = Y87G2A.11 (Len=362)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y87G2A.11, Len=362):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSECLMFGMDCEARCMTSMTADEENICFLVGTNNIKNDKNQVNKLFMDPEASRLMSKTFRHPAGEVRAIAAHPTKSTILA 80  
WD40-rpts                                                      (___________________WD 1________

Query       81 TCTADFSSLGGTHSITIWNIEEDKRTLETVSRLPTEQVMSCLEWEPNSMKCAAMTPFRPEIQLLNMENGPEIVQNLKIPL 160 
WD40-rpts      __________)        (____________________WD 2____________________)            (__

Query      161 ENEEDEMFSATWSPHHDGNMLGVTGGRTAWCIDCRTDNEYLKIRDAHIHRTISMDFNPNLQHVIATCGDDGYVRIWDTRS 240 
WD40-rpts      _____________WD 3_______________)    (_________________WD 4_________________)   

Query      241 TSSALTSLHPHAHWVWSVRFHPVHDQLLLTGGSDASVVLSCAQSVSSEQQIEFRDDEEEEEDDDLVEKLQDGQLERIDEH 320 
WD40-rpts       (_________________WD 5_________________)                             (_________

Query      321 EDSVYACAWSSADPWTFASLSYDGRMIVSNVSRKHKYALMQL 362 
WD40-rpts      ________WD 6_________________)            

6 WD40-repeats found in QUERY=Y87G2A.11 (Len=362):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6    49-91       3.16  245.13  0.03053        7.5%     46.25
  WD 2:  Seg 11   100-145      5.24  331.04  0.00215       17.5%     48.87
  WD 3:  Seg 15   158-193      5.38  337.07  0.00178       15.0%     49.96
  WD 4:  Seg 18   198-237      7.94  442.79  6.7e-05       25.0%     50.73
  WD 5:  Seg 21   242-281      7.19  411.66  0.00018       27.5%     50.54
  WD 6:  Seg 26   311-350      6.00  362.47  0.00081       25.0%     54.16

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   49-91     PEASRLMSKTFR-----HPAGEVRAIAAHP-TK-S-T-ILATCTADFSSLGG
   WD 2  100-145    IEE---DKRTLETVSRLPTEQVMSCLEWEP-NSMK-C-AAMTPFRPEIQLLN
   WD 3  158-193    --------IPLE-----NEEDEMFSATWSP-HH-DGN-MLGVTGGRTAWCID
   WD 4  198-237    -NE---YLKIRD-----AHIHRTISMDFNP-NL-Q-HVIATCGDDGYVRIWD
   WD 5  242-281    -SS---ALTSLH-----PHAHWVWSVRFHPVHD-Q-L-LLTGGSDASVVLSC
   WD 6  311-350    -DG---QLERID-----EHEDSVYACAWSSADP-W-T-FASLSYDGRMIVSN

   WD40 Template    TGE---CLRTLS-----GHTSGVTSVSFSP-DG-K-R-LVSGSEDGTIKVWD