Input parameters:

  Query = Y79H2A.6 (Len=368)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y79H2A.6, Len=368):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSGVPVLHWNFGIGPITCHAWNKDRTQIAVSASSNDIHIFEWRNGDWQSIHTLSEHDLPVTGLDWGTKTNRIVSCSQDK 80  
WD40-rpts        (_________________WD 1_________________) (___________________WD 2_____________

Query       81 NAFVWTFDKNVWKPELVLVRFNRAATYVKWSPLENKFAVGSGAKLVSVCYYEKENDWWVSKQIKKPIRSTVTCLDWHSNN 160 
WD40-rpts      _____)(___________________WD 3___________________)   (___________________WD 4___

Query      161 VLLAVGSCDFKCRVFSAYVKEVDEKPSPNPWGQKMPFGQLMSEYSVGGWVHRVAFSPSGCRLAFVSHDSSVSFVDSTVDS 240 
WD40-rpts      _______________)                    (_________________WD 5________________)    (

Query      241 QKVQNLLTIHLPFTTVEWITENSVVTAGHDCSPVLFVVSQDVLKEVCKLDVPSAAKSSTVNSALQLFKNIDRNNAAEKIN 320 
WD40-rpts      _________________WD 6________________)           (______________________________

Query      321 VALKTLHQNRITQILPHSGTVGNVVKFTTCGTDGIVALWDLKNHPSLV 368 
WD40-rpts      ___WD 7________________________________)        

7 WD40-repeats found in QUERY=Y79H2A.6 (Len=368):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-42       8.38  460.74  3.8e-05       10.0%     54.00
  WD 2:  Seg  5    44-86       9.23  495.82  1.3e-05       32.5%     54.92
  WD 3:  Seg  9    87-130      7.38  419.51  0.00014       20.0%     58.93
  WD 4:  Seg 13   134-176      7.93  442.41  6.8e-05       20.0%     50.84
  WD 5:  Seg 17   197-235      7.06  406.26  0.00021       30.0%     53.84
  WD 6:  Seg 21   240-278      7.21  412.59  0.00017       10.0%     49.55
  WD 7:  Seg 26   290-360      4.98  320.43  0.00299       15.0%     50.28

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-42     SG------V---PVL---------------------HWNFGIGPITCHAWNKDRT----QIAVSASSNDIHIFE
   WD 2   44-86     RN---GDWQ---SIH---------------------TLSEHDLPVTGLDWGTKTN----RIVSCSQDKNAFVWT
   WD 3   87-130    FD--KNVWK---PEL---------------------VLVRFNRAATYVKWSPLEN----KFAVGSGAKLVSVCY
   WD 4  134-176    EN------DWWVSKQ---------------------IKKPIRSTVTCLDWHSNNV----LLAVGSCDFKCRVFS
   WD 5  197-235    -F------G---QLM---------------------SEYSVGGWVHRVAFSPSGC----RLAFVSHDSSVSFVD
   WD 6  240-278    -S------Q---KVQ---------------------NLLTIHLPFTTVEWITENS----VVTAGHDCSPVLFVV
   WD 7  290-360    DVPSAAKSS---TVNSALQLFKNIDRNNAAEKINVALKTLHQNRITQILPHSGTVGNVVKFTTCGTDGIVALWD

   WD40 Template    TG------E---CLR---------------------TLSGHTSGVTSVSFSPDGK----RLVSGSEDGTIKVWD