Input parameters:

  Query = Y77E11A.13a (Len=313)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y77E11A.13a, Len=313):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTTVRQRIDTQHRDAIHDAQLNIYGSRLATCGSDRLVKIFEVRPNGQSYPMAELVGHSGPVWKVSWAHPKYGGLLASASY 80  
WD40-rpts           (_______________WD 1_______________)      (__________________WD 2__________

Query       81 DKKVIIWNEQQGRWQKAYEWAAHEASTTCVAFAPHQYGLMLASASADGDIGILRYDNSSNEWISSKIQKCHEQGVNSVCW 160 
WD40-rpts      _______)     (__________________WD 3_________________)  (______________________W

Query      161 APGSADPAAKKRLVSAGNDKNVKIWAFDDATNEWILEKTLAGHTDFVREAAWCPVTNNGQHTIVSCGMEGNLVLFRTSNI 240 
WD40-rpts      D 4______________________)       (___________________WD 5__________________)(___

Query      241 ETEEWKAKLLETAPCALYHSSFSPCGSFLSVAGDDNVITIWRENLQGQWIKVPRDNKEREGMSQAVGAPGAQR 313 
WD40-rpts      _________________WD 6____________________)                               

6 WD40-repeats found in QUERY=Y77E11A.13a (Len=313):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     6-41       8.20  453.44  4.8e-05       17.5%     49.95
  WD 2:  Seg  4    48-88       7.69  432.44  9.2e-05       30.0%     51.43
  WD 3:  Seg  8    94-134      7.45  422.34  0.00013       30.0%     55.42
  WD 4:  Seg 12   137-186      8.27  456.33  4.4e-05       35.0%     52.33
  WD 5:  Seg 16   194-236      7.25  414.32  0.00016       25.0%     51.68
  WD 6:  Seg 20   237-282      8.30  457.70  4.2e-05       27.5%     55.32

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    6-41     ----------QRIDTQHRDAIHDAQLN--I----Y--G------SRLATCGSDRLVKIFE
   WD 2   48-88     -SY------PMAELVGHSGPVWKVSWAHPK----Y--G------GLLASASYDKKVIIWN
   WD 3   94-134    -WQ------KAYEWAAHEASTTCVAFA--P----HQYG------LMLASASADGDIGILR
   WD 4  137-186    NSS--NEWISSKIQKCHEQGVNSVCWA--P----G--SADPAAKKRLVSAGNDKNVKIWA
   WD 5  194-236    -WI------LEKTLAGHTDFVREAAWC--PVTNNG--Q------HTIVSCGMEGNLVLFR
   WD 6  237-282    TSNIETEEWKAKLLETAPCALYHSSFS--P----C--G------SFLSVAGDDNVITIWR

   WD40 Template    TGE------CLRTLSGHTSGVTSVSFS--P----D--G------KRLVSGSEDGTIKVWD