Input parameters:

  Query = Y74C10AR.1 (Len=327)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y74C10AR.1, Len=327):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRPLSLKGHERALTRVRFNREGDLTFSCAKDKKPCVWYTENGERIGSYDGHNGAVWDIDVSWDTTKCVTASGDLTVKIWD 80  
WD40-rpts      (________________WD 1________________)   (_________________WD 2________________)

Query       81 AELGNCLYTINHQTPMKSCGFSYSGNLVCFTTQKMTKNLSTFQVRDLRDSSQMVEGGESFFYSQFDVNATTALFTQMDDL 160 
WD40-rpts         (________________WD 3________________)              (_________________WD 4___

Query      161 VTIGFESGLLQQYDLRNPDTPIHTNESVHRYSVQDLQLSPRGDFLISASRDKTAALLDVNDLKKLKQYKSERPVNSACIS 240 
WD40-rpts      _____________)(___________________WD 5___________________)   (________________WD

Query      241 PNRDHICLGGGEDAMQVTQTSVSAGHFEAKIYHMVFEEEFARFKGHFGPINTMAWHPSGTIIATGGEDGYIRIQEFDEDY 320 
WD40-rpts       6________________)                 (_________________WD 7________________)     

Query      321 LGFTYDF 327 
WD40-rpts             

7 WD40-repeats found in QUERY=Y74C10AR.1 (Len=327):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       8.50  465.71  3.3e-05       27.5%     51.55
  WD 2:  Seg  5    42-80      10.20  536.08  3.7e-06       35.0%     56.07
  WD 3:  Seg  9    84-121      7.38  419.53  0.00014       25.0%     55.11
  WD 4:  Seg 13   136-174      7.59  428.04  0.00011       20.0%     54.48
  WD 5:  Seg 17   175-218      8.47  464.60  3.4e-05       30.0%     54.83
  WD 6:  Seg 21   222-259      6.59  386.80  0.00038       17.5%     53.40
  WD 7:  Seg 26   277-315      9.46  505.57  9.5e-06       25.0%     56.66

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     MRP----L--SLKGHERALTRVRFNREGDLTFSCAKDKKPCVWY
   WD 2   42-80     -GE----RIGSYDGHNGAVWDIDVSWDTTKCVTASGDLTVKIWD
   WD 3   84-121    -GN----CLYTI-NHQTPMKSCGFSYSGNLVCFTTQKMTKNLST
   WD 4  136-174    -GG----ESFFYSQFDVNATTALFTQMDDLVTIGFESGLLQQYD
   WD 5  175-218    LRNPDTPIHTNESVHRYSVQDLQLSPRGDFLISASRDKTAALLD
   WD 6  222-259    -LK----KLKQYKSERP-VNSACISPNRDHICLGGGEDAMQVTQ
   WD 7  277-315    -EE----EFARFKGHFGPINTMAWHPSGTIIATGGEDGYIRIQE

   WD40 Template    TGE----CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD