Input parameters:

  Query = Y71H2AM.23 (Len=496)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y71H2AM.23, Len=496):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQILNLLSRNVGVFKTVTLCEQKMQQVSLMQARHLAVPGGKAVFKRDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGA 80  
WD40-rpts                                                                                      

Query       81 KYRKYEDIDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMPQTREHLLL 160 
WD40-rpts                            (_____________________________WD 1________________________

Query      161 ARQVGVPLDNIVVFMNKVDEVPDAETRELVEMDIREQLNEFGYPGDTCPVIFGSALCALEGKQPEIGEEAVKQLLEVLDN 240 
WD40-rpts      _____)                                                                          

Query      241 KFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQL 320 
WD40-rpts                                                                                      

Query      321 GVLLRGLGPKDVRRGCVLLPQGHKHKVTDKVKAQLYVLKESEGGAKTPIANYFSEHVFSLTWDSGASVRIIGKDFVMPGE 400 
WD40-rpts                                                                                      

Query      401 SAEVELSLNSQMFIEPQQRFTIRKGAKTIGTGVFTDVLPPLTNDEKDPKSKKKLMKAEMERLGFNPYGDMVEKRLKPDFS 480 
WD40-rpts                                                                                      

Query      481 NSPKDNPAAKAFEGQP 496 
WD40-rpts                      

1 WD40-repeats found in QUERY=Y71H2AM.23 (Len=496):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   103-166      3.40  255.30  0.02236       20.0%      2.88

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  103-166    AFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMPQTREHLLLARQVGV

   WD40 Template    TGECLR-TLSGHTSGVTSVSFS------------PDGKRLVSGSEDGTIK-----------VWD