Input parameters:

  Query = Y71G12B.1b (Len=487)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y71G12B.1b, Len=487):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDHFMPIIYWHDRKGLLSVDLHHETRNGKYRLATASVQKEVRVWEFEFEMGLDPKTQENKPQLTVGFLANLVFHNHAINQ 80  
WD40-rpts        (___________________WD 1__________________)                   (_______________

Query       81 VKFSPSKEHELLASGDCEGRITIWKLSDQPVPPPQDEMPSNKENWIRYKVLNHNSDVNALCWDPSGTQLASVSNDHTLAV 160 
WD40-rpts      ___WD 2_________________)(__________________________WD 3________________________

Query      161 HDALTGKRLFVASNFRSPNGVCWDPSGKYIATMSPDRKMDLIDAVRGARLKHFSSALLPSMTIPSANGDLHLETKIHKLF 240 
WD40-rpts      _)(__________________WD 4_________________)   (_____________WD 5_____________) (

Query      241 HDDQLFSFQRALGFSPNGEFIAAPCAHLELGSSDLYGTYFFRREDLGVKEAPYTFYPAPRPTFLVKFSPVTFSLLPSTKE 320 
WD40-rpts      _______________WD 6______________)              (_________________WD 7__________

Query      321 NHLGLPYRLLWIALNKDAIYFYDSQHSYPVAVVDNIHLNALTDASFSHDGRVLVVSSLEGFCSFVKINLTQWGEVMTEIV 400 
WD40-rpts      ______)                (___________________WD 8__________________)              

Query      401 PVCGSPNLIEEKKQKKRKSTVAVVIEKEKEKEEDAAKSPMRKPSETPKVSTPKAAGTPLTKFFKKENNTESPTPPVKKRI 480 
WD40-rpts                                                                                      

Query      481 QLVTLDN 487 
WD40-rpts             

8 WD40-repeats found in QUERY=Y71G12B.1b (Len=487):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-45       5.51  342.43  0.00151       22.5%     46.65
  WD 2:  Seg  5    65-105      6.73  392.70  0.00032       32.5%     51.27
  WD 3:  Seg  9   106-162      7.87  439.75  7.4e-05       30.0%     57.37
  WD 4:  Seg 13   163-203      7.56  426.88  0.00011       20.0%     48.58
  WD 5:  Seg 17   207-238      3.08  242.09  0.03350       12.5%     23.33
  WD 6:  Seg 20   240-274      5.10  325.19  0.00258       15.0%     18.51
  WD 7:  Seg 23   289-327      5.16  327.88  0.00237       17.5%     11.38
  WD 8:  Seg 27   344-386      7.09  407.34  0.00020       27.5%     57.64

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-45     --H-----------------FMP-IIYWHDRKGLLSVDLHH--ETRNGKYRLATASVQKEVRVWE
   WD 2   65-105    -VG-----------------FLA-NLVFHNH-AINQVKFSPSKEHE----LLASGDCEGRITIWK
   WD 3  106-162    LSDQPVPPPQDEMPSNKENWIRY-KVLNHNS-DVNALCWDP--SGT----QLASVSNDHTLAVHD
   WD 4  163-203    ALT-----------------GKRLFVASNFR-SPNGVCWDP--SGK----YIATMSPDRKMDLID
   WD 5  207-238    -GA-----------------RLK-HFSSALL-PSMTIPS-------------ANGDLHLETKIHK
   WD 6  240-274    ----------------------F-HDDQLFS-FQRALGFSP--NGE----FIAAPCAHLELGSSD
   WD 7  289-327    -KE-----------------APY-TFYPAPR-PTFLVKFSP--VTF----SLLPSTKENHLGLPY
   WD 8  344-386    SQH--------------SYPVAV-VDNIHLN-ALTDASFSH--DGR----VLVVSSLEGFCSFVK

   WD40 Template    TGE-----------------CLR-TLSGHTS-GVTSVSFSP--DGK----RLVSGSEDGTIKVWD