Input parameters:

  Query = Y71G12B.1a (Len=489)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y71G12B.1a, Len=489):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDHFMPIIYWHDRKGLLSVDLHHETRNGKYRLATASVQKEVRVRVWEFEFEMGLDPKTQENKPQLTVGFLANLVFHNHAI 80  
WD40-rpts        (____________________WD 1___________________)                       (_________

Query       81 NQVKFSPSKEHELLASGDCEGRITIWKLSDQPVPPPQDEMPSNKENWIRYKVLNHNSDVNALCWDPSGTQLASVSNDHTL 160 
WD40-rpts      _______WD 2_______________)(__________________________WD 3______________________

Query      161 AVHDALTGKRLFVASNFRSPNGVCWDPSGKYIATMSPDRKMDLIDAVRGARLKHFSSALLPSMTIPSANGDLHLETKIHK 240 
WD40-rpts      ___)(__________________WD 4_________________)                                   

Query      241 LFHDDQLFSFQRALGFSPNGEFIAAPCAHLELGSSDLYGTYFFRREDLGVKEAPYTFYPAPRPTFLVKFSPVTFSLLPST 320 
WD40-rpts       (_______________WD 5______________)              (_________________WD 6________

Query      321 KENHLGLPYRLLWIALNKDAIYFYDSQHSYPVAVVDNIHLNALTDASFSHDGRVLVVSSLEGFCSFVKINLTQWGEVMTE 400 
WD40-rpts      ________)                (___________________WD 7__________________)            

Query      401 IVPVCGSPNLIEEKKQKKRKSTVAVVIEKEKEKEEDAAKSPMRKPSETPKVSTPKAAGTPLTKFFKKENNTESPTPPVKK 480 
WD40-rpts                                                                                      

Query      481 RIQLVTLDN 489 
WD40-rpts               

7 WD40-repeats found in QUERY=Y71G12B.1a (Len=489):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-47       4.17  286.92  0.00844       15.0%     34.58
  WD 2:  Seg  5    71-107      6.94  401.39  0.00024       30.0%     47.65
  WD 3:  Seg  8   108-164      7.90  440.81  7.1e-05       30.0%     57.78
  WD 4:  Seg 12   165-205      7.49  424.00  0.00012       20.0%     50.06
  WD 5:  Seg 18   242-276      5.10  325.17  0.00258       15.0%     20.38
  WD 6:  Seg 21   291-329      5.19  329.11  0.00228       17.5%     11.28
  WD 7:  Seg 25   346-388      7.10  407.90  0.00020       27.5%     57.46

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-47     HFM-----------------PI-I-YWHDRKGLLSVDLHHETR--NGKYRLATASVQKEVRVRVWE
   WD 2   71-107    ----------------------AN-LVFHNHAINQVKFSPSKEHEL------LASGDCEGRITIWK
   WD 3  108-164    LSDQPVPPPQDEMPSNKENWIRYK-VLNHNSDVNALCWDPSGT--Q------LASVSNDHTLAVHD
   WD 4  165-205    ALT-----------------GKRLFVASNFRSPNGVCWDPSGK--Y------IATMSPDRKMDLID
   WD 5  242-276    ----------------------FH-DDQLFSFQRALGFSPNGE--F------IAAPCAHLELGSSD
   WD 6  291-329    -KE-----------------APYT-FYPAPRPTFLVKFSPVTF--S------LLPSTKENHLGLPY
   WD 7  346-388    SQH--------------SYPVAVV-DNIHLNALTDASFSHDGR--V------LVVSSLEGFCSFVK

   WD40 Template    TGE-----------------CLRT-LSGHTSGVTSVSFSPDGK--R------LVSGSEDGTIKVWD