Input parameters:

  Query = Y71G12A.3 (Len=869)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y71G12A.3, Len=869):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKILWESDWQGARIEQTITHLSWIQQQDKPDHGLLGVGTETGSVGVTLTDFKPTPDDLTRYNFNLRGHHNAIRMVTWNKS 80  
WD40-rpts              (_________________WD 1_________________)          (_________________WD 2

Query       81 QSKLASCDASGIIYVWVRNDDRWSVELVNDRGVKVSDLSWSPCGGSALICYDDNFVLIGSANGQRVWSNSFPLPAAVTCG 160 
WD40-rpts      ________________)(___________________WD 3__________________)   (________________

Query      161 VWAPDSRQLVLGFSTGTIQVLSNAGVNITSRSFTEDKLTQMAFSPLRTKVREVEWTLAMLSSANKIYMISAYDQLHPAIY 240 
WD40-rpts      _WD 4________________)  (_________________WD 5________________)        (________

Query      241 RSKFQVIRMEWNTDGTILALINANNELVMIDTTCRVIHRERIPIADKEKTLIPNPPPTQKLTAFTWAHNGNVVIIAAGGC 320 
WD40-rpts      _________WD 6_________________)                                                 

Query      321 LTVGRILFGVPSLFEIVTYDLWKMMGCSSKKVDKLPIPLKEMNALRELDHHVIRCRIPRSQDMCSYVCSVVDARCYCTIR 400 
WD40-rpts                                                                                      

Query      401 PLARGSHTYVLCFEHLGGLVPLLLGRQVNRFLPQFQIFMYQSKPPTSSPPSGSSAQVEDVNSIFRYSTGRNSLWRRSKRQ 480 
WD40-rpts                                                                                      

Query      481 IRALMSRHVRPTRPDTRLLQVTSNVWCTRFNISSLSPSLLPTFLGQVIYKTSVLHLQPRQMTIDLAVLQRKDGKELPEAS 560 
WD40-rpts                                                                                      

Query      561 VDGTTHMTSSPDQGLTSEERQFFQKILAECLSLRAVINSSNFGKPPPPAAASTISLPCQPSTSKEPDSSAHTTPISTRTV 640 
WD40-rpts                                                                                      

Query      641 ESKHDVTSMASSVSTWHEEIEALAFIDGDADEKAMLVQPALKTGWAAMEQASKKDAEVIRSHVDKLASIAEQLSKRHGDF 720 
WD40-rpts                                                                                      

Query      721 NVKRDKASINKMRSQMKTLLRRVNEIEQKVANGDVKTEVRQLLNTLNEMKKALGEGVPKSGRSLNSTCKIETMTNKTPFW 800 
WD40-rpts                                                                                      

Query      801 NEQNQVYQLDFGGRVTQESAKNFQIELDSKQVLQFGRIEGGSYTLDFRYPFSAAQAFAVALASITQRLK 869 
WD40-rpts                                                                           

6 WD40-repeats found in QUERY=Y71G12A.3 (Len=869):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     9-48       4.19  287.68  0.00824       17.5%     23.60
  WD 2:  Seg  5    59-97       7.46  422.73  0.00012       25.0%     44.94
  WD 3:  Seg  8    98-140      6.48  382.24  0.00044       15.0%     56.52
  WD 4:  Seg 12   144-182      7.11  408.23  0.00020       27.5%     52.13
  WD 5:  Seg 16   185-223      5.13  326.52  0.00247       15.0%     31.00
  WD 6:  Seg 20   232-271      6.32  375.58  0.00054       12.5%     46.28

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    9-48     WQG---ARIEQTITHLSWIQQQDKPDHGLLGVGTETGSVGVTL
   WD 2   59-97     -TR---YNFNLRGHHNAIRMVTWNKSQSKLASCDASGIIYVWV
   WD 3   98-140    RNDDRWSVELVNDRGVKVSDLSWSPCGGSALICYDDNFVLIGS
   WD 4  144-182    -QR---VWSNSFPLPAAVTCGVWAPDSRQLVLGFSTGTIQVLS
   WD 5  185-223    -GV---NITSRSFTEDKLTQMAFSPLRTKVREVEWTLAMLSSA
   WD 6  232-271    YDQ---LHPAIYRSKFQVIRMEWNTDGTILALINANNELVMID

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD