Input parameters:

  Query = Y57E12B.3 (Len=684)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y57E12B.3, Len=684):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVCKMLWIAIFIAITVSAAPTDSSPSAAATSPATPTIGPAQNGLTAASPGVGRLFIFENICQKYFGFKLFRNHNHFCIRR 80  
WD40-rpts                                                                                      

Query       81 QFVLHACSDSTDFVEMKSLLLLFLLFLHTLCENVTTPNSEEDTDMTATPSTITPLLSTAQNPSLPKTSKLPLALKTPVPT 160 
WD40-rpts                                                                                      

Query      161 FPFSSLATSDWLSSMPTIQTLLPPPLPLTTLEVPENENFGFTSLAPLWTLPTQPPAWSPMLDSPIKPIQNSMFPTFPTMP 240 
WD40-rpts                                                                                      

Query      241 TLPTLPTLAPFTFPTLPPPTTMKPLNITIDPEALMDVPEIITHWGYPVETHKVVTVDGYILTLHRIPHGKNETSKSASKT 320 
WD40-rpts                                                                                      

Query      321 PKPVVFLQHGLLCTSSIWLLNLPRQSAGYIFADQGYDVWLGNMRGNTYSKEHTRMTSADRRFWKFSWEEMARYDLPAMIN 400 
WD40-rpts                                                                                      

Query      401 YALKTTKRQNLYYVGHSQGALTMFAKMSEDPEMSKKIRKFFAMAPVARMSHVKGLFQNLGQIYEQYNLVYQVFGDGEFLT 480 
WD40-rpts           (___________________________________________________________WD 1___________

Query      481 NNIFTKLLTDIFCDQAVNNPLCENFIFAVSGPNSNQFNNSRIGIYLAHNPAGTSSRNILHFAQMVKKKRMSRFDHGKDLN 560 
WD40-rpts      ________________________________________________)                               

Query      561 LKIYGAPSPPEYDIRKINSSIYLFYSDFDWLANPKDVEGFLIPMLPSKTLKKATKLRDFNHNDFLWGMRARKEIYDKIIN 640 
WD40-rpts                                                                                      

Query      641 TIKLDQRRVKLQNSMERFFERQSRNSTSGLDEETMMRSLPDTIS 684 
WD40-rpts                                                  

1 WD40-repeats found in QUERY=Y57E12B.3 (Len=684):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   406-529      2.79  229.73  0.04878       17.5%      4.53

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  406-529    TKRQNLYYVGHSQGALTMFAKMSEDPEMSKKIRKFFAMAPVARMSHVKGLFQNLGQIYEQYNLVYQVFGDGEFLTNNIFTKLLTDIFCDQAVNNPLCENFIFAVSGPNSNQFNNSRIGIYLAHN

   WD40 Template    TGECLRTLSGHT--------------------------SGVTSVSFS---------------------------PD------------GKRLV-----------SGSEDGTIKV--------WD