Input parameters:

  Query = Y54H5A.1 (Len=453)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y54H5A.1, Len=453):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSGENDVEMHDEDPVEDIDESEEEVDETDDEDEEVPENQRQAYIPGLSRPLKKGEELDFDPSAYKLFHSFNSDWPCLSFD 80  
WD40-rpts                                                                                      

Query       81 VVKDGLGENRTQFPAECYIVSGTQADKPRDNEIIVMGLKNLTTMRKEKENKGDDSDTSEDESEDEDAEEEKKREPKMHAV 160 
WD40-rpts                              (_____________________WD 1____________________)         

Query      161 SIPHYGGINRIRSDRLGDSTVCACWSDQGRVQVWNITDALNYTHGMSGESKTEVQKIDRPLFTNNGSGKEGYGLAWSSLK 240 
WD40-rpts       (______________WD 2______________)(____________________________WD 3____________

Query      241 TGDLATGDIIKKIYLWQMKEGGQWAVGANPLTGHKKSVEDLAWSPTETGLLASCSADGSIKLWDTRSAPKDACVCTVQKA 320 
WD40-rpts      ________________)         (________________WD 4________________)       (________

Query      321 HESDVNVISWNRHENLIVSGGDDGELKIWSLKTIQFGQPVALFKYHNSPITSVDWHPHETTTFMASGEDDQTTIWDIATE 400 
WD40-rpts      _________WD 5________________)      (_________________WD 6_________________)    

Query      401 ADGQTNIEGVPPQLMFVHMGQNEVKEVHWHQQIPGLAINTSIDGFNVFKTINI 453 
WD40-rpts                                                           

6 WD40-repeats found in QUERY=Y54H5A.1 (Len=453):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   105-151      2.91  234.97  0.04161       12.5%      1.55
  WD 2:  Seg  6   162-195      3.73  268.58  0.01486       17.5%     44.56
  WD 3:  Seg  9   196-257      4.04  281.42  0.01000       20.0%     47.54
  WD 4:  Seg 14   267-304      7.03  404.95  0.00022       37.5%     45.27
  WD 5:  Seg 17   312-350      8.02  445.79  6.1e-05       27.5%     51.60
  WD 6:  Seg 21   357-396      7.15  410.04  0.00019       27.5%     53.54

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  105-151    ADKPRDNEIIVMG---------------------LKNLTTMRKEKENKGD--DSDTSEDESEDEDAEEEK
   WD 2  162-195    ------------------------------------IPHYGGINRIRSDRLGDSTVCACWSDQGRVQVWN
   WD 3  196-257    ITD-------ALNYTHGMSGESKTEVQKIDRPLFTNNGSGKEGYGLAWSS-LKTGDLATGDIIKKIYLWQ
   WD 4  267-304    ----------GAN---------------------PLTGHKKSVEDLAWSP-TETGLLASCSADGSIKLWD
   WD 5  312-350    -AC-------VCT---------------------VQKAHESDVNVISWNR--HENLIVSGGDDGELKIWS
   WD 6  357-396    -GQ-------PVA---------------------LFKYHNSPITSVDWHP-HETTTFMASGEDDQTTIWD

   WD40 Template    TGE-------CLR---------------------TLSGHTSGVTSVSFSP--DGKRLVSGSEDGTIKVWD