Input parameters:

  Query = Y54G2A.12 (Len=274)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y54G2A.12, Len=274):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDALQAYSDSEHSDNDVSMDQIAKGKSSALLERAIVTAPDVESKSAIRQVAIVDPKTKEIKSNPKFDQLFKPESGPVNHF 80  
WD40-rpts                                                                                      

Query       81 KSEQFGTTRFVGDVKKAEAEKGVSLFESKKTGGEQRKRVGNDDSADIDGYSGPWSRYVDEKTVAKPTPELQKQMDEIVKK 160 
WD40-rpts                          (_________________________________________________WD 1______

Query      161 GQEKSRRLKKEKEDSEHMAEESSTLHLKETVDYSMDTKIKLWEVYDRQRVVRTYSGHKLPVREVAFNNEGTEFLSASFDR 240 
WD40-rpts      __________________________________________)    (_________________WD 2___________

Query      241 YVNTGQINGSLECGIDLHFFVKKLLFSHYFPLFF 274 
WD40-rpts      _____)                            

2 WD40-repeats found in QUERY=Y54G2A.12 (Len=274):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   101-203      3.48  258.59  0.02021       27.5%     24.45
  WD 2:  Seg  4   208-246      8.82  478.82  2.2e-05       30.0%     53.60

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  101-203    KGVSLFESKKTGGEQRKRVGNDDSADIDGYSGPWSRYVDEKTVAKPTPELQKQMDEIVKKGQEKSRRLKKEKEDSEHMAEESSTLHLKETVDYSMDTKIKLWE
   WD 2  208-246    -QRVVRTYSGH-----------------------------------K----------------------------LPVREVAFNNEGTEFLSASFDRYVNTGQ

   WD40 Template    TGECLRTLSGH-----------------------------------T----------------------------SGVTSVSFSPDGKRLVSGSEDGTIKVWD