Input parameters:

  Query = Y54E2A.11a (Len=725)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y54E2A.11a, Len=725):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVEIDFNKENEEDFSDPPGFVDDVTDDVLVPDVLHKKPTIDEFEDNCVFIAGIPVVGADRLGKLQSVLKKVLERLDPAVK 80  
WD40-rpts                                                                                      

Query       81 LYIPPSPEGGCLGVLLTEWADQRSAQFAVKSLNGYAFDKNHTFTARSFKDMKQLEAPSDHWTTPEKQAYNDVGDLWWWLQ 160 
WD40-rpts                                                                                      

Query      161 NERCRDQFAISHDKLGVPTVGVFTNMKGNDPELAGDADKAERANWTETVFTWSPHGSYLSTIHKQGIILWGGKDYARAHR 240 
WD40-rpts                                                                             (________

Query      241 FAHTNVQYIDFSPWETYLVTYAAPEESNSWGDCEKDSLRIWDVRTGELKKAFSTFELTGRTQLPTWPFFRWSFDEKYFAC 320 
WD40-rpts      _______________WD 1______________________)   (____________________WD 2__________

Query      321 LKAPEKDKLEREQKINGISIFESEKFELYEGRPVNIENIKQFEWSPTSTVLAYYSECTDAVPAEFGLLQVPSMQRLRSAR 400 
WD40-rpts      __________)                                                                     

Query      401 VHNVADAQMFWQKSGKRLAFYTMRFKKKEYRETGEVKYVGGCQYHVDIFEIDKKDVSLMNLPLSEPFIHFDWDPEGDKFC 480 
WD40-rpts                 (_________________WD 3________________)                              

Query      481 VLVGNTAKATPQVYKIEANSHAPKLVSKLDAGVHFNEVQFAPKGGWLAVLAKVSAGGNVYFIDTSLSEAKRTNVIEHPLF 560 
WD40-rpts                      (_____________________WD 4____________________)   (_____________

Query      561 NKGYWDPTGRYFVTCSTLGGRAGADLGYRIFTFQGRELCRKNLDRLAQFKWRPRPPVKLSEQKQREIKKNLKKTAAKFIK 640 
WD40-rpts      _______WD 5____________________)                                                

Query      641 QDDDEKCRASQEVVEKRRKIMAAFDIIRSRNREQLDATRDERISLRNGVDTEAQLDEDEFVDEEITIALSTSKTQAPLTE 720 
WD40-rpts                                                                                      

Query      721 EEMRD 725 
WD40-rpts           

5 WD40-repeats found in QUERY=Y54E2A.11a (Len=725):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10   232-282      4.57  303.47  0.00505       25.0%     51.80
  WD 2:  Seg 14   286-331      2.86  232.73  0.04453       17.5%     32.12
  WD 3:  Seg 24   412-450      3.49  258.71  0.02013       10.0%     31.43
  WD 4:  Seg 30   497-543      3.18  245.83  0.02988       22.5%     47.11
  WD 5:  Seg 33   547-592      3.20  246.79  0.02902       20.0%     50.35

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  232-282    GKDY----ARAHRFAHTNVQY-------IDFSPWETYLV---TYAAPEESNSWGDCEKDSLRIWD
   WD 2  286-331    -GEL----KKAFSTFELTGRTQLPTWPFFRWSFDEKYFA---CLK-----------APEKDKLER
   WD 3  412-450    Q-KS----GKRLAFYTMRFKK-------KEYRETGEVKY---VGG-----------CQYHVDIFE
   WD 4  497-543    EANSHAPKLVSKLDAGVHFNE-------VQFAPKGGWLAVLAKVS-----------AGGNVYFID
   WD 5  547-592    -SEA----KRTNVIEHPLFNK-------GYWDPTGRYFV---TCS----TLGGRAGADLGYRIFT

   WD40 Template    TGEC----LRTLSGHTSGVTS-------VSFSPDGKRLV---SGS-----------EDGTIKVWD