Input parameters:

  Query = Y53G8AM.8 (Len=839)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y53G8AM.8, Len=839):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVPTTPFTIENTPVGRGNSGARSHKEPSAKRKKPTSTPTVRCGTVPQEPSTSAATVTQKPAGSTMATANITETRRIDISS 80  
WD40-rpts                                                                                      

Query       81 CSDRPLIPCTASGVPLTTFSNKSLDSILNQDSEIVGGISQKDLNELRNRGPNMTVKQLLAKNFKNYKVRQSLTSELATEF 160 
WD40-rpts                                                                                      

Query      161 VNRTLSENDVPMGALIMPPMEDVQESIVKESKTYNYAAASGGSLPFSNPHSEGILIRSPAIKGPHTLRDVLDSLGSVGTP 240 
WD40-rpts                                                                                      

Query      241 AANQTLKDVLGSFNSQQPIDPTPSKTLKDVLGSLDLDNDYDLKLKMEGLDHDLKVESPTDAELGLDEFANQILSSKYKGT 320 
WD40-rpts                                                                                      

Query      321 SLDTDHTAYPGNHLPWPVLWKNPVPKYIQGEIYCYVDGCTYSPMSEIIKSGKFMVPLDHPVEFIFKDRPILVTMEELLTA 400 
WD40-rpts                                                                                      

Query      401 NGINMSKAQHYRMLQGLLQKSGVHIRADYAERLHEFQALMDGLEIEDKPRPALKLSSDKLPLMCIYPDIYMNALGRRIHG 480 
WD40-rpts                          (______________________________WD 1_________________________

Query      481 AVIVDSSGDNYPLPNKSYETTVYSESLPFESRRQILIIYDAEIPILEISRRFSCTVRSVQETIGTRTLITRHQIAEFLLE 560 
WD40-rpts      _____)                                                                          

Query      561 NPESPDSPDITTAPSKNSTIGDMMRPKSKIRRTHYVDLNKMVWRHFKDCQAAGIQINGKQLKDQAMRYAKDMGLESFRGS 640 
WD40-rpts                                                                                      

Query      641 EGWLDAFKRRHRIDLKSMTGYPVCYENDMYEEVDKECRELDMESHMLHQQPPSFFPQSAPDEFAASFFSSLSGFPQQMVV 720 
WD40-rpts                                                                                      

Query      721 QEPPTTSSSNHLQNMINSMMTPPVVDSRMMPSTSSAGASGASASSQEPDGGGDTIFNVMRSCQIKVADKEVSHALDTLRT 800 
WD40-rpts                                                                                      

Query      801 YILEHDPAAMSLLVPLQERLATTSSGAIGRDMPSTSSSS 839 
WD40-rpts                                             

1 WD40-repeats found in QUERY=Y53G8AM.8 (Len=839):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   421-486      3.10  242.91  0.03267       22.5%     17.15

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  421-486    SGVHIRADYAERLHEFQALMDGLEIEDKPRPALKLSSDKLPLMCIYPDIYMNALGRRIHGAVIVDS

   WD40 Template    TGECLR---------------TLSGHTSGVTSVSFSPDGKRLVSGSED-----------GTIKVWD