Input parameters:

  Query = Y53F4B.11 (Len=254)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y53F4B.11, Len=254):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 METEICEQLGDLHLDKEAILLRAEQIEQDIKARKYSVIPPLSDEEQNLLDAEIAKRAAPPPGVPDAADFPLHDIVKELGL 80  
WD40-rpts               (______________________________________________________________________

Query       81 DKPVDGTDPEFYEELKAKDANTVYKNMKDVPDSIAAKYLPDLARRFVEFERRVKRVERMLWALPREDRSLEEDRFEILTE 160 
WD40-rpts      ______________WD 1______________________________________________________________

Query      161 LLDKSCQGLEIWEEHCERKIPLGHRCVLEGELIHLITSKFDLIDKICGEFDKLKNKRSEVNDERDMLRYEIRHCDMIFTE 240 
WD40-rpts      _____________________)                                                          

Query      241 IHEKFLKSYLEMDW 254 
WD40-rpts                    

1 WD40-repeats found in QUERY=Y53F4B.11 (Len=254):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    10-182      3.01  239.09  0.03670       25.0%     -27.69

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   10-182    GDLHLDKEAILLRAEQIEQDIKARKYSVIPPLSDEEQNLLDAEIAKRAAPPPGVPDAADFPLHDIVKELGLDKPVDGTDPEFYEELKAKDANTVYKNMKDVPDSIAAKYLPDLARRFVEFERRVKRVERMLWALPREDRSLEEDRFEILTELLDKSCQGLEIWEEHCERKIPL

   WD40 Template    GECLRT-------------------------LS---------------GHTSGVTSVSFSP--------DGKRLVSGSE----------------------------------------------------------DGTI----------------------------KVWD