Input parameters:

  Query = Y53C12B.1 (Len=793)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y53C12B.1, Len=793):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTEPIKEIAAKRSVEAVYTGGTVRWSANGQKLFSTCTNVVKVIDLADNTASYTIGDPEDELRITCTAVDKNRNRLLVAYN 80  
WD40-rpts      (___________________WD 1___________________)   (__________________WD 2__________

Query       81 NQIIREYSIPLDPSTTKPELARTWKTIHTAPILVMEFNEEGHLLATGSADHIVKVWNLTEQQCTHTLKGPSVVSAILFGK 160 
WD40-rpts      _______)(______________________WD 3_____________________)   (________________WD 

Query      161 HEKLVVGYIEGQLNLYNIMRGAPKKLVNTWKSHNSHITALLQVPDSRVVVALSRDQTMSIHETETQETLRVLPLYESIEG 240 
WD40-rpts      4_______________)      (_________________WD 5________________)   (______________

Query      241 GAIGHNGNLFTVGEEGVVKEFVIETAKLVRKKRIASSNLDHLAYDVVSNRFLAISAEQNLIILDFENLKIARQIVGFHDE 320 
WD40-rpts      __WD 6_______________)   (_________________WD 7________________)   (____________

Query      321 IYSCCLLGKDESHMAVASNTSEIRLYNTKTLDCQLIRGHTESVLSVVSPTWDTSLLASCSKDNSIIFWRLVTSPENDSCS 400 
WD40-rpts      _____WD 8_________________)(__________________WD 9__________________)           

Query      401 TLVPVAAATGHANTVTALAISNTGRAPFLASVSTDCTIKLWGLGVSTKLKEVKIDAEKDFVEQLPKLTCSSTMVAHGKDV 480 
WD40-rpts       (__________________WD10_________________)                        (_____________

Query      481 NCVDISESDALIATGGMDKLVKLWQVDTHKMQLGIAGTLSGHRRGVGDVKFAKNSHKLASCSGDMTIKIWNISEKSCLQT 560 
WD40-rpts      ____WD11________________)           (_______________WD12______________)   (_____

Query      561 ISGHSCAVFRVIFARNDSQLISADSAGIIKIWTIKTADCECSIDAHTDKIWSLSKNHNESEFVTAGTDGRIVVWKDVTEE 640 
WD40-rpts      ____________WD13________________)   (_________________WD14________________)     

Query      641 KQKAEDNKRREAIEQDQTLTNLLSQKRYSEALVFALTLAKPFCAFKVINALMAEETPEELGSAIRRLDTRQIEILLQFTV 720 
WD40-rpts                                                                                      

Query      721 KWNTNSRTSSVAQRVLYEIVHIVDPEELVSMPGAYGYIESFLPYTQRHMDRLDRAKQDVSLFDFVWRQMRSSV 793 
WD40-rpts                                                                               

14 WD40-repeats found in QUERY=Y53C12B.1 (Len=793):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-44       3.76  270.00  0.01422       25.0%     44.69
  WD 2:  Seg  5    48-88       5.64  347.56  0.00129       12.5%     58.12
  WD 3:  Seg  9    89-137      7.49  423.89  0.00012       30.0%     43.73
  WD 4:  Seg 12   141-177      5.92  359.00  0.00090       30.0%     55.35
  WD 5:  Seg 16   184-222      8.37  460.23  3.9e-05       25.0%     55.19
  WD 6:  Seg 20   226-262      5.15  327.40  0.00241       22.5%     53.48
  WD 7:  Seg 24   266-304      7.26  414.52  0.00016       12.5%     57.61
  WD 8:  Seg 28   308-347      6.08  365.69  0.00073       15.0%     56.97
  WD 9:  Seg 32   348-389      7.19  411.74  0.00018       37.5%     53.35
  WD10:  Seg 36   402-442      7.04  405.50  0.00021       35.0%     51.28
  WD11:  Seg 41   467-505      7.99  444.73  6.3e-05       25.0%     47.41
  WD12:  Seg 44   517-551      8.87  481.17  2.0e-05       42.5%     48.87
  WD13:  Seg 47   555-593      9.63  512.62  7.7e-06       37.5%     56.39
  WD14:  Seg 51   597-635      8.85  480.33  2.1e-05       27.5%     57.27

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-44     MTEP-IKE---------IAAKRSVEAVYTGGTV-R-WSANGQK--LFSTCTN-VVKVID
   WD 2   48-88     -NTA-SYT---------IGDPED---ELRITCT-A-VDKNRNR--LLVAYNNQIIREYS
   WD 3   89-137    IPLD-PSTTKPELARTWKTIHTA-----PILVM-E-FNEEGHL--LATGSADHIVKVWN
   WD 4  141-177    -QQC-THT---------LKGP-S-----VVSAI-L-FGKHEK---LVVGYIEGQLNLYN
   WD 5  184-222    -KKL-VNT---------WKSHNS-----HITAL-L-QVPDSRV--VVALSRDQTMSIHE
   WD 6  226-262    -QET-LRV---------LPLYES------IEGG-A-IGHNGNL--FTVGE-EGVVKEFV
   WD 7  266-304    -AKL-VRK---------KRIASS-----NLDHL-A-YDVVSNR--FLAISAEQNLIILD
   WD 8  308-347    -LKI-ARQ---------IVGFHD-----EIYSC-CLLGKDESH--MAVASNTSEIRLYN
   WD 9  348-389    TKTLDCQL---------IRGHTE-----SVLSVVS-PTWDTSL--LASCSKDNSIIFWR
   WD10  402-442    -LVP-VAA---------ATGHAN-----TVTAL-A-ISNTGRAPFLASVSTDCTIKLWG
   WD11  467-505    -LTC-SST---------MVAHGK-----DVNCV-D-ISESDAL--IATGGMDKLVKLWQ
   WD12  517-551    ------GT---------LSGHRR-----GVGDV-K-FAKNSHK--LASCSGDMTIKIWN
   WD13  555-593    -KSC-LQT---------ISGHSC-----AVFRV-I-FARNDSQ--LISADSAGIIKIWT
   WD14  597-635    -ADC-ECS---------IDAHTD-----KIWSL-S-KNHNESE--FVTAGTDGRIVVWK

   WD40 Template    TGEC-LRT---------LSGHTS-----GVTSV-S-FSPDGKR--LVSGSEDGTIKVWD