Input parameters:

  Query = Y50C1A.2 (Len=406)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y50C1A.2, Len=406):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEDVTLFQFTWRKPIRLQGEIVYKTSETQTIETNKKDVECVANFQENKEVQTDSVDNGVGENVKKDITISKEVLNLLYDF 80  
WD40-rpts                                                                                      

Query       81 VRDDSKVNYDRLLEFHKFDKVALETVQKYHVETRNENIILMISSSSRKTLILFGGISHETFCSHQARALLCSSSTSFSIP 160 
WD40-rpts                                                                                      

Query      161 LPVCAISAVFYSSTQFILGDVSGNISMCSKDKIIFEKKITDGAVTCLEMCRHGLLSGSDDGNIILWQIGTSGLEKLGGTK 240 
WD40-rpts                                   (________________WD 1________________)             

Query      241 LTVSDLSRKIRRSSTSNKPVAIVSMQVYVWPSGEEACVATETGGLYLLTLPTLDYKPLSHQTATSINKILFENQFVAVIY 320 
WD40-rpts                                                                                      

Query      321 HTSNAAVFNSEGLVDEIPFVATLAVRCGPYFIFSDRHRLLIWSQNTRSRVIDENGACHAICALSNDTLQLLDVDFNLVSN 400 
WD40-rpts                                                                                      

Query      401 FLNDKL 406 
WD40-rpts            

1 WD40-repeats found in QUERY=Y50C1A.2 (Len=406):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13   190-227      4.78  312.09  0.00387       25.0%     30.23

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  190-227    KDKIIFEKKITDGAVTCLEMCRH------GLLSGSDDGNIILWQ

   WD40 Template    TGECLRTLSGHTSGVTSV----SFSPDGKRLVSGSEDGTIKVWD