Input parameters:

  Query = Y49E10.21a (Len=707)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y49E10.21a, Len=707):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQALQERLEKLENATGSEVWEVLKASEPELRQDLSSLQKLKADKESAAREALTALKTKKNELKNLKNDVESLKNEYKTYI 80  
WD40-rpts                     (________________________________________________________________

Query       81 EMVENGLKQSGLDIKQVVQVFERVLEESLSEKRLAILSTIDSAHISDIKSIKTPVKSILKLLEDPNKLQLRILVQSELRE 160 
WD40-rpts      ________________________________________________________________________________

Query      161 FSNSAIEIFRRSLWDLFQNQGIPMKNLGEMPNSEDFLQKIGELFQFSTDLDKLIAGNWGKSIENLISAAFGQLSNYCIDI 240 
WD40-rpts      _WD 1___________________________________________________________________________

Query      241 IENERGEADFEWILKSSHDWAKNLSQILQKTVEKSNLESELKQEFEEKFNEKFVDFIKLITRKFLEKNIKEPTIFSNVAQ 320 
WD40-rpts      ______________________________________________________________________)         

Query      321 MLKKFKISSEFNLSGDRDLQEPFYEPKFMSRWILVYYIVAKISEYPVLTQLFAPLKITLEVEMYKITCDKLLSSASCFEP 400 
WD40-rpts                                                                                      

Query      401 LPSIFIGKSSNFWWASEVTVFFDQWISRIDNNINCLENLDAQRAFYEVLYALMIDLCTRIHVEANRLYSESSWSNDVYLV 480 
WD40-rpts                                                                                      

Query      481 MNTVWELKRLVQISTESWPMPPFEVEKAYEDEWNRLSGMIVEYLNDIVDNMDRCVRSSYASDKQKVIKETFFHVIKCLNN 560 
WD40-rpts                                                                                      

Query      561 VTIKASKPSTSRLLNVLIEQLFKNLQCRFDKWQGYCSTEVLGCFYTQIYSNLLPQLDELHKTDHWNRENASRSEICRLDA 640 
WD40-rpts                                                                                      

Query      641 LLKMAANSDPSGELVRTAFRSIDEEQVIKMLGELGIHSTSDHAFQDYQILAENWQKIEEKGFGYGDY 707 
WD40-rpts                                                                         

1 WD40-repeats found in QUERY=Y49E10.21a (Len=707):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    16-311      3.28  250.20  0.02614       22.5%      3.98

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   16-311    GSEVWEVLKASEPELRQDLSSLQKLKADKESAAREALTALKTKKNELKNLKNDVESLKNEYKTYIEMVENGLKQSGLDIKQVVQVFERVLEESLSEKRLAILSTIDSAHISDIKSIKTPVKSILKLLEDPNKLQLRILVQSELREFSNSAIEIFRRSLWDLFQNQGIPMKNLGEMPNSEDFLQKIGELFQFSTDLDKLIAGNWGKSIENLISAAFGQLSNYCIDIIENERGEADFEWILKSSHDWAKNLSQILQKTVEKSNLESELKQEFEEKFNEKFVDFIKLITRKFLEKNIKE

   WD40 Template    G----------E------------------------------------------------------------------------------------------------------CLRT-----------------------------------------------------LSGHTS-------------GVTSVSFSPDGKRLVS------------------------GSED-------GT-----------------I-------------------------------KVWD