Input parameters:

  Query = Y44E3A.6b (Len=843)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y44E3A.6b, Len=843):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVDSHGLQSPDVVVEKYTISREKSSIGFEIGNNVTVQLNAPSDVDNGRERDSSNAHTKVIMDHKGDIQYLRGRILTSNGP 80  
WD40-rpts                                                                   (________________WD

Query       81 IVGFRSIHESVGESMNLINLQTKQRHRFKDFPFRTIDLAFAQHHKYLAVLNADLSLVVFEVSDRCDPKKYLSIVNWPSYQ 160 
WD40-rpts       1________________)  (_________________WD 2________________)                    

Query      161 SQGNEDQPKLSWCPYIQGEDEDDETIHMIAVYLGRQLYIVNLGVLKEAGLGDTIEFEDAKKEDGGLFCHYFSDQPDKKNL 240 
WD40-rpts                               (_________________WD 3_________________)   (___________

Query      241 RIASVCISPDSTAVAIAKTEGPVQFFTFNEENNTLTAAHCFEPRGFARNGLIDDLIFLDDLTPDRRKSLPFWRSCVVVSN 320 
WD40-rpts      ______WD 4________________)                                                     

Query      321 DGHKVALYECQSWKCLGRIRFETTRAINKFVSISDPAANFVHLLDVDGMNVFTIEIRNPFRTDEQPRFVGITQTSFCHSI 400 
WD40-rpts                 (___________________WD 5__________________)                          

Query      401 FSIAPISSNTFENAEDSGDDLFNNDSNDEESGDESDGTESDTRMKHTKIKRHFVAMGKRSMVELQLTLKQHIPSPVGTVA 480 
WD40-rpts                                                                                      

Query      481 AESSQKEPSPSVYVDTETPEHQQLQNSGGLLMKVAPQTSSIDVESVNQKLDDVIAALARIEADRKNSNEQMVQQIVTALD 560 
WD40-rpts                                                                                      

Query      561 ENIRMREGYMLNRIEQVCENGRLDTIAAIRNGLANLNGNMETFVRDQGVETAEYISQRVGSTTRNALAECILPSFERSCE 640 
WD40-rpts                                                                                      

Query      641 VLFERLNEHFRHGINEYLATTSQMIQGTAMATMQMAAQQQQQKGELERIALLRMIETNPEEAVEAALNKADMSILEFVCS 720 
WD40-rpts                                                                                      

Query      721 KINPEKIVIPGNTKLSQKCLVSLVSQFTATLSSDRDLKFKWIELVIPEIDMSDPEIIHVVTPVAQKLVNALQELMENTAD 800 
WD40-rpts                                                                                      

Query      801 EPVRRYVRLLYQMTRSSLLQPPTPSQRTFPAALSKFLSDHSQQ 843 
WD40-rpts                                                 

5 WD40-repeats found in QUERY=Y44E3A.6b (Len=843):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    62-99       3.94  277.31  0.01135        7.5%     21.10
  WD 2:  Seg  8   102-140      6.40  378.93  0.00049       12.5%     42.62
  WD 3:  Seg 13   186-225      3.06  240.87  0.03476       10.0%     13.31
  WD 4:  Seg 15   229-267      5.88  357.42  0.00095       15.0%     40.10
  WD 5:  Seg 22   332-374      3.32  251.81  0.02488       15.0%     41.28

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   62-99     --DHKGDIQYLRGRILT---SN-GPIVGFRSIHESVGESMNLIN
   WD 2  102-140    -TKQRHRFKDFPFRTID---LA-FAQHHKYLAVLNADLSLVVFE
   WD 3  186-225    -IHMIAVYLGRQLYIVN---LGVLKEAGLGDTIEFEDAKKEDGG
   WD 4  229-267    -HYFSDQPDKKNLRIAS---VC-ISPDSTAVAIAKTEGPVQFFT
   WD 5  332-374    SWKCLGRIRFETTRAINKFVSI-SDPAANFVHLLDVDGMNVFTI

   WD40 Template    TGECLRTLSGHTSGVTS---VS-FSPDGKRLVSGSEDGTIKVWD