Input parameters:

  Query = Y43F4B.4 (Len=363)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y43F4B.4, Len=363):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQEDDSVKPFQTVGAHRDLIHCVSFDPHGRRMATCASDMTMAIWDRKPDGNWRRSAHWKCHGGAVWRVIWAHPEFGQIVA 80  
WD40-rpts           (_________________WD 1_________________)      (__________________WD 2______

Query       81 TCSYDRTIVIWEEQIVRSEKDLKQKESQWIRRTIISDNRSDVTDICFSPRHLGLMMASCNVLGTVRIYEAPDIVDASRWN 160 
WD40-rpts      ___________)                      (_______________WD 3______________)         (_

Query      161 LIHELQAFHTRCGCVTWSLSRMHRPLIAVGSDEKKAENKKRVVIYENIDGLRKWQRINSLVFDLPCPITDLKFSPISMVD 240 
WD40-rpts      _________________WD 4__________________)      (_______________________WD 5______

Query      241 SHQLAVASGDVHVYNIKVARSAILEEDGVENPIQLADYNLIKVALLGDHRKAWRLRYNLMGSVISSTSLDGTLRSWKSLF 320 
WD40-rpts      ________________)                     (_________________WD 6________________)   

Query      321 VNQWVKLSEMNVDDYVPSPEEVRAFISSKTTERLPSQLEKTYF 363 
WD40-rpts                                                 

6 WD40-repeats found in QUERY=Y43F4B.4 (Len=363):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     6-45       9.78  518.76  6.3e-06       30.0%     55.62
  WD 2:  Seg  5    52-92       6.78  394.85  0.00030       22.5%     55.73
  WD 3:  Seg 10   115-149      6.77  394.45  0.00030       27.5%     47.47
  WD 4:  Seg 13   159-200      5.00  321.38  0.00290       12.5%     38.00
  WD 5:  Seg 17   207-257      6.23  371.86  0.00061       25.0%     50.95
  WD 6:  Seg 22   279-317      7.71  433.29  9.0e-05       22.5%     57.42

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    6-45     SVKPFQ-------TVGAHRDLIHCVSFD--P----H--GRRMATCASDMTMAIWD
   WD 2   52-92     -WRRSA-------HWKCHGGAVWRVIWAHPE----F--GQIVATCSYDRTIVIWE
   WD 3  115-149    --------------ISDNRSDVTDICFS--P----RHLGLMMASCNVLGTVRIYE
   WD 4  159-200    -WNLIH-------ELQAFHTRCGCVTWS--L-SRMH--RPLIAVGSDEKKAENKK
   WD 5  207-257    NIDGLRKWQRINSLVFDLPCPITDLKFS--PISMVD--SHQLAVASGDVHVYNIK
   WD 6  279-317    -NLIKV-------ALLGDHRKAWRLRYN--L----M--GSVISSTSLDGTLRSWK

   WD40 Template    TGECLR-------TLSGHTSGVTSVSFS--P----D--GKRLVSGSEDGTIKVWD