Input parameters:

  Query = Y41C4A.12a (Len=278)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y41C4A.12a, Len=278):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKRIQEIQQNLERLAEMDEHLEQCEEWNVVAQEIVQKLSTIRKEVERSAAPTPLLLTPPGSCGSGSIYSDISSEMTNVYT 80  
WD40-rpts                                                         (____________________________

Query       81 EAVEAYDQQIYSRCVRLVEGANRESPVDMCLISLAHHSYAEMVNAASGSDDAMKFAKWWAEFLDSVEAGRGHSEKIELLD 160 
WD40-rpts      ______________________________________________________WD 1______________________

Query      161 YEAVAYEKIVKLGGVADVEKLIEVVVRSYEMVTLLNRPYHILSLQKLFRLTNVLSSSEVDLESDAFSSAKTVVLTGIQNV 240 
WD40-rpts      ___________________________________________________________)                    

Query      241 LRDRKKFAQLGKFNEHNMKIAMRRTAQPDFRVRYCEKR 278 
WD40-rpts                                            

1 WD40-repeats found in QUERY=Y41C4A.12a (Len=278):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    52-220      3.85  273.76  0.01266       27.5%     -2.06

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   52-220    TPLLLTPPGSCGSGSIYSDISSEMTNVYTEAVEAYDQQIYSRCVRLVEGANRESPVDMCLISLAHHSYAEMVNAASGSDDAMKFAKWWAEFLDSVEAGRGHSEKIELLDYEAVAYEKIVKLGGVADVEKLIEVVVRSYEMVTLLNRPYHILSLQKLFRLTNVLSSSEVD

   WD40 Template    GECLRTLSGHTSGVTSVSFS-----------------------------PDGKRLV-------------------SGS-----------------------------ED-------------GT-------------------IKVW---------------------D