Input parameters:

  Query = Y41C4A.11 (Len=386)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y41C4A.11, Len=386):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSYPDDFPIPHVIQPVKVVRHVVKETPIKTPYLDVCPKCQTTIMTSVTTHIGMCWWLICFFGTFLFCWPILICLCFDVSK 80  
WD40-rpts                     (_________________WD 1_________________)                         

Query       81 DVDHNCPNCGLLLATSNRAAPNFVSHSDRVKSVDFHSEKPWILTALHTGNVQIWNYDTKTLVKAMEVSEKSTRAAKFIHR 160 
WD40-rpts                      (_________________WD 2________________)   (_________________WD 3

Query      161 KNWIATASDDQQIRIFDAETFSLINEFTAHSDFIRSLTVHPTLPYLISASDDRKIRVWDWENEWRMEQEFQEHAHYIMQI 240 
WD40-rpts      ________________)   (_________________WD 4________________)    (________________

Query      241 AVNPEDPEMFVSGSLDKTLKVWKLGEQESICTLEGHEKGVNCVEFLTGGRIVSGSDDCSICVWDIQTQKCIETLKNAHKN 320 
WD40-rpts      _WD 5_________________)   (________________WD 6________________)   (____________

Query      321 NVTFVTPFKTWIISGAEDSTVKIWNSQTFSLEKELNFEKGRAWCVAAGKSDAIAVGFDSGAVTVEI 386 
WD40-rpts      ____WD 7________________)   (________________WD 8________________)

8 WD40-repeats found in QUERY=Y41C4A.11 (Len=386):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    16-55       3.97  278.67  0.01088        7.5%     42.34
  WD 2:  Seg  8    97-135      8.95  484.21  1.9e-05       17.5%     50.65
  WD 3:  Seg 12   139-177      8.44  463.36  3.5e-05       12.5%     55.41
  WD 4:  Seg 16   181-219      9.52  507.87  8.9e-06       27.5%     56.19
  WD 5:  Seg 20   224-263      8.10  449.18  5.5e-05       30.0%     52.44
  WD 6:  Seg 24   267-304      9.09  490.31  1.5e-05       50.0%     50.88
  WD 7:  Seg 28   308-345      7.12  408.63  0.00019       37.5%     49.32
  WD 8:  Seg 32   349-386      5.31  334.14  0.00195       12.5%     49.82

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   16-55     VKVVRHVV-KETPIKTPYLDVCP-KCQTTIMTSVTTHIGMCW
   WD 2   97-135    -NRAAPNF-VSHSDRVKSVDFHS-EKPWILTALHTGNVQIWN
   WD 3  139-177    -KTLVKAM-EVSEKSTRAAKFIH-RKNWIATASDDQQIRIFD
   WD 4  181-219    -FSLINEF-TAHSDFIRSLTVHP-TLPYLISASDDRKIRVWD
   WD 5  224-263    -WRMEQEF-QEHAHYIMQIAVNPEDPEMFVSGSLDKTLKVWK
   WD 6  267-304    -QESICTL-EGHEKGVNCVEFLT-GG-RIVSGSDDCSICVWD
   WD 7  308-345    -QKCIETLKNAHKNNVTFV--TP-FKTWIISGAEDSTVKIWN
   WD 8  349-386    -FSLEKEL-NFEKGRAWCVAAGK-SD-AIAVGFDSGAVTVEI

   WD40 Template    TGECLRTL-SGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD