Input parameters:

  Query = Y39H10A.6 (Len=555)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y39H10A.6, Len=555):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTVDEQLDDVGRKGKKMSVAQRLQNHAQLSPRSQDDPEETESVIRKEIALGKYDKATIRIIAQFLDNIGLTSSVETLVEE 80  
WD40-rpts                                                                                      

Query       81 TGFTIETTSGARVRANILKGNYDAAIQILETSNDHITEETAKHGSYIVKCFKLADLVRKGRYFDALFTMQKMIRGVILDH 160 
WD40-rpts                                                                                      

Query      161 SEHFDYFDTFFKDVLLGNCRYQNIDQVAERQSQLAFLEEILPSDFILPQNRLKTILNKVHGAAADEKAPKLLRDEPSNSV 240 
WD40-rpts                                                                                      

Query      241 KTIPWRQTQLWDHHKFEIFCVKFSRNGKMMASGGKSNSITLWKCAKSKLTRIGEMAPINEGDIAYMEFCQQNKYLLICGG 320 
WD40-rpts          (_________________WD 1________________)(_____________________WD 2___________

Query      321 QMARYNLTIFDIATRSVFRMLRVNNTHDDIIDIGSFFSCGSFLTDTYNRTRVVAGNEFGAMKVFDLSRGEHEPAIRQQAG 400 
WD40-rpts      __________)(________________________WD 3________________________)   (___________

Query      401 FRIRCLHGMRSGDSFIAVDTHNRVRLFSFANNTTENLEGTTICKEEVTIIHMTVHPSERLVLTTTELNLRLWDIRTHNLI 480 
WD40-rpts      ______WD 4_________________)            (______________WD 5_____________)   (___

Query      481 RIFSGACQREEFSRYQIHSSFGGVHQNFIATGSIGKETDESLRETTKPSENTAASSSGVFRTVVPATRSSAIEAT 555 
WD40-rpts      ___________________WD 6______________________)                             

6 WD40-repeats found in QUERY=Y39H10A.6 (Len=555):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   245-283      8.04  446.92  5.9e-05       25.0%     46.91
  WD 2:  Seg  4   284-331      5.62  346.96  0.00131       10.0%     46.40
  WD 3:  Seg  8   332-385      5.79  353.95  0.00106       35.0%     52.49
  WD 4:  Seg 12   389-428      5.98  361.58  0.00083        7.5%     48.70
  WD 5:  Seg 15   441-473      4.94  318.71  0.00315       10.0%     44.68
  WD 6:  Seg 18   477-526      4.33  293.44  0.00689       17.5%     41.20

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  245-283    -W-----R-----QTQLWDHHKF-E-------IFCVKFSRNGK---------MMASGG----KSN---SITLWK
   WD 2  284-331    CA-----KSKLTRIGEMAPINEG-D-------IAYMEFCQQNK---------YLLICG----GQMARYNLTIFD
   WD 3  332-385    IATRSVFR-----MLRVNNTHDD-I-------IDIGSFFSCGSFLTDTYNRTRVVAGN----EFG---AMKVFD
   WD 4  389-428    -G-----E-----HEPAIRQQAGFR-------IRCLHGMRSGD---------SFIAVD----THN---RVRLFS
   WD 5  441-473    ----------------TICKEEV-T-------IIHMTVHPSER---------LVLTTT-----EL---NLRLWD
   WD 6  477-526    -H-----N-----LIRIFSGACQ-REEFSRYQIHSSFGGVHQN---------FIATGSIGKETDE---SLRETT

   WD40 Template    TG-----E-----CLRTLSGHTS-G-------VTSVSFSPDGK---------RLVSGS----EDG---TIKVWD