Input parameters:

  Query = Y39G10AR.9b (Len=419)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y39G10AR.9b, Len=419):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAINGSKGIGTTLQTTIKMEAETAQNPSKNIDETLSIQHDWHLNLREPVSQFYLGIKKFEATKTEFFQVQITKLVDEYGF 80  
WD40-rpts           (______________WD 1______________)       (______________WD 2_____________)_

Query       81 AVMPEEGSIKSSDFTDVSLDEHKNLHVTFQGRTTIFVGPTSEQNLRGLQSAPRSFDVSCTGSTFVAADSSGKLIIANSRT 160 
WD40-rpts      _______________WD 3_________________)(_________________WD 4_________________)   

Query      161 AETLTELTGHTMDIYRCMYFPSGLVVIGGGMDMAIRVWAVDKVPAQKTFVGHTKAVTGFGIIGVGREFLSCSNDGTVRFW 240 
WD40-rpts      (_________________WD 5________________)   (_________________WD 6________________

Query      241 SCKNAAPTETWSFEKGKCIDMAMSVDDSRFAVICENNFLSAIDLHGDKIRRDIQLPSVPTALCFSGDEGGKAVFVGFEDG 320 
WD40-rpts      )   (_________________WD 7________________)  (__________________WD 8____________

Query      321 HVAAYNVSDRRLIGEIVTKKGSVTCLKYYCNRLIASFTTGNVLAFPILSLPTSSSIISAEYELTGADCEPVYDMAIYQKN 400 
WD40-rpts      _____)   (________________WD 9_______________)           (________________WD10__

Query      401 IYTCCRDGKIRTYKAQWSL 419 
WD40-rpts      _____________)     

10 WD40-repeats found in QUERY=Y39G10AR.9b (Len=419):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     6-39       3.79  271.39  0.01362       15.0%     20.99
  WD 2:  Seg  3    47-79       4.17  287.02  0.00841        2.5%     29.55
  WD 3:  Seg  5    78-117      8.11  449.47  5.4e-05       12.5%     37.27
  WD 4:  Seg  9   118-157      9.54  508.60  8.7e-06       20.0%     46.31
  WD 5:  Seg 12   161-199      9.85  521.50  5.8e-06       32.5%     53.58
  WD 6:  Seg 16   203-241      9.81  519.78  6.1e-06       32.5%     54.06
  WD 7:  Seg 20   245-283      8.47  464.62  3.4e-05       17.5%     53.90
  WD 8:  Seg 24   286-326      7.04  405.56  0.00021       32.5%     54.65
  WD 9:  Seg 28   330-366      6.72  392.12  0.00032       10.0%     55.00
  WD10:  Seg 33   378-414      4.81  313.23  0.00373       12.5%     45.47

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    6-39     SKGIGTTLQTTIKMEAETAQNP--------SKNIDETLSIQH
   WD 2   47-79     E-------PVSQFYLGIKKFEAT--KTEFFQVQITKLVDEYG
   WD 3   78-117    YGFAVMPEEGSIKSSDFTDVSLD--EHKNLHVTFQGRTTIFV
   WD 4  118-157    GPTSEQNLRGLQSAPRSFDVSCT--GSTFVAADSSGKLIIAN
   WD 5  161-199    -AETLTELTGHTMDIYRCMYFPS--GLVVIGGGMDMAIRVWA
   WD 6  203-241    -VPAQKTFVGHTKAVTGFGIIGV--GREFLSCSNDGTVRFWS
   WD 7  245-283    -AAPTETWSFEKGKCIDMAMSVD--DSRFAVICENNFLSAID
   WD 8  286-326    -GDKIRRDIQLPSVPTALCFSGDEGGKAVFVGFEDGHVAAYN
   WD 9  330-366    -RRLIGEIVTKKGSVTCLKYYCN--R--LIASFTTGNVLAFP
   WD10  378-414    -SAEYELTGADCEPVYDM--AIY--QKNIYTCCRDGKIRTYK

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPD--GKRLVSGSEDGTIKVWD