Input parameters:

  Query = Y39A1A.1b (Len=388)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y39A1A.1b, Len=388):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSKKEETIFFRIEKENRPESSKKEEDENSTEEMTTLNHASVTLDHSAFAIADKDGFKMYQLNPLHFRMYKDYVIKVGPVR 80  
WD40-rpts                            (________________WD 1________________)(___________________

Query       81 LVKQDGNSRRIIYVSALAGGRFAQNNLMIFDVARNEEYFEITTPSRYGPITNIHVSPNRLVALNPNRMFVWTYPDDIKQI 160 
WD40-rpts      ____WD 2______________________)(__________________WD 3_________________)(_______

Query      161 RSEDIRSNPKGISAMSYDPTTAACYLAYPGFKTGSVQIMHLNALTARESKSPIVIEAHLTDIAQVALNCQGTLVATGSTK 240 
WD40-rpts      ______________WD 4_____________________)        (_________________WD 5__________

Query      241 GTVIRVFDARTKGPLYELRRGTVQAHLQCMAFSPCSSYLAVASDKGTLHMFGIRDAEPQKKKNVLERSRGSSSIVKIQLD 320 
WD40-rpts      _______)   (__________________WD 6_________________)      (_________________WD 7

Query      321 RPVMAIGFGKIPETPKNLQSIIAICADATYWRHEFYKDNTGNFTSHFGSYDELIEVANDSSFFRTPVE 388 
WD40-rpts      ________________)(__________________WD 8_________________)          

8 WD40-repeats found in QUERY=Y39A1A.1b (Len=388):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    23-60       3.92  276.64  0.01159       15.0%     42.74
  WD 2:  Seg  5    61-111      3.34  252.64  0.02426       12.5%     54.50
  WD 3:  Seg  9   112-152      3.11  242.94  0.03264       15.0%     37.93
  WD 4:  Seg 13   153-200      2.91  234.78  0.04185       10.0%     27.01
  WD 5:  Seg 17   209-248      7.23  413.44  0.00017       25.0%     50.51
  WD 6:  Seg 21   252-292      5.84  355.85  0.00100       25.0%     55.15
  WD 7:  Seg 24   299-337      4.09  283.50  0.00937       10.0%     22.21
  WD 8:  Seg 27   338-378      3.66  265.77  0.01620       17.5%     39.47

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   23-60     -K----EEDE----NSTEEM--T-------TLNHASVTLDHS---AFA-IADK-------DG--FKMYQ
   WD 2   61-111    LNPLHFRMYK----DYVIKV--G-------PVRLVKQDGNSR---RII-YVSALAGGRFAQNN-LMIFD
   WD 3  112-152    VA----RNEEYFEITTPSRY--G-------PITNIHVSPNRL---VAL-N----------PNR-MFVWT
   WD 4  153-200    YP----DDIK----QIRSED--IRSNPKGISAMSYDPTTAAC---YLAYPGFK-------TGS-VQIMH
   WD 5  209-248    -S----KSPI----VIEAHL--T-------DIAQVALNCQGT---LVA-TGST-------KGTVIRVFD
   WD 6  252-292    -K----GPLY----ELRRGTVQA-------HLQCMAFSPCSS---YLA-VASD-------KGT-LHMFG
   WD 7  299-337    -Q----KKKN----VLERSR--G-------SSSIVKIQLDRP---VMA-IGFG-------KIP-ETPKN
   WD 8  338-378    LQ----SII------AICAD--A-------TYWRHEFYKDNTGNFTSH-FGSY-------DEL-IEVAN

   WD40 Template    TG----ECLR----TLSGHT--S-------GVTSVSFSPDGK---RLV-SGSE-------DGT-IKVWD