Input parameters:

  Query = Y39A1A.1a (Len=386)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y39A1A.1a, Len=386):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSKKEETIFFRIEKENRPESSKKEEDENSTEEMTTLNHASVTLDHSAFAIADKDGFKMYQLNPLHFRMYKDYVIKVGPVR 80  
WD40-rpts                            (________________WD 1________________)(___________________

Query       81 LVKQDGNSRRIIYVSALAGGRFAQNNLMIFDVARNEEYFEITTPSRYGPITNIHVSPNRLVALNPNRMFVWTYPDDIKQI 160 
WD40-rpts      ____WD 2______________________)(__________________WD 3_________________)(_______

Query      161 RSEDIRSNPKGISAMSYDPTTAACYLAYPGFKTGSVQIMHLNALTARESKSPIVIEAHLTDIAQVALNCQGTLVATGSTK 240 
WD40-rpts      ______________WD 4_____________________)        (_________________WD 5__________

Query      241 GTVIRVFDARTKGPLYELRRGTVQAHLQCMAFSPCSSYLAVASDKGTLHMFGIRDAEPQKKKNVLERSRGSSSIVKIQLD 320 
WD40-rpts      _______)    (_________________WD 6_________________)      (_________________WD 7

Query      321 RPVMAIGFGKKTPKNLQSIIAICADATYWRHEFYKDNTGNFTSHFGSYDELIEVANDSSFFRTPVE 386 
WD40-rpts      ________________)(_________________WD 8________________)          

8 WD40-repeats found in QUERY=Y39A1A.1a (Len=386):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    23-60       4.02  280.85  0.01018       15.0%     41.55
  WD 2:  Seg  5    61-111      3.61  263.67  0.01728       12.5%     53.76
  WD 3:  Seg  9   112-152      3.33  252.40  0.02444       15.0%     39.35
  WD 4:  Seg 13   153-200      3.48  258.30  0.02039       12.5%     38.53
  WD 5:  Seg 17   209-248      7.46  422.99  0.00012       25.0%     52.49
  WD 6:  Seg 21   253-292      5.83  355.32  0.00101       22.5%     57.29
  WD 7:  Seg 25   299-337      5.82  355.04  0.00102       15.0%     31.25
  WD 8:  Seg 27   338-376      3.55  261.22  0.01864       17.5%     39.77

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   23-60     -K----EEDE----NSTEEMTT-L----NHASVTLDHS---AFA-IADK-------DG--FKMYQ
   WD 2   61-111    LNPLHFRMYK----DYVIKVGP-V----RLVKQDGNSR---RII-YVSALAGGRFAQNN-LMIFD
   WD 3  112-152    VA----RNEEYFEITTPSRYGP-I----TNIHVSPNRL---VAL-N----------PNR-MFVWT
   WD 4  153-200    YP-DDIKQIR----SEDIRSNP-KGISAMSYDPTTAAC---YLAYPGFK-------TGS-VQIMH
   WD 5  209-248    -S----KSPI----VIEAHLTD-I----AQVALNCQGT---LVA-TGST-------KGTVIRVFD
   WD 6  253-292    -G----PLYE----LRRGTVQAHL----QCMAFSPCSS---YLA-VASD-------KGT-LHMFG
   WD 7  299-337    -Q----KKKN----VLERSRGS-S----SIVKIQLDRP---VMA-IGFG-------KKT-PKNLQ
   WD 8  338-376    --------SI----IAICADAT-Y----WRHEFYKDNTGNFTSH-FGSY-------DEL-IEVAN

   WD40 Template    TG----ECLR----TLSGHTSG-V----TSVSFSPDGK---RLV-SGSE-------DGT-IKVWD