Input parameters:

  Query = Y37E11C.1 (Len=854)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y37E11C.1, Len=854):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFPFLAPIRSANHVEQQGTKYYVEITFLADSPYSRAPSSTGTEKSVIPTLRNLDDLETVSNKSRSSEGVNKLGSRPNSRS 80  
WD40-rpts                                                                                      

Query       81 SAIVKKTSVSSLPTSARSEGKSSPIPVKDAIPAPARHKNKGLEMSSAMMELFGGGGSTSPAPSKRENPADAPSDRVVSNA 160 
WD40-rpts                                                                                      

Query      161 KLSQPGPEWFEGFEQMDMTDIELPPDPNCPAEKVLRGEKSTPDFDSDWQEAKEDVLDPQSYPKSFNPAESLPGPDIGAGV 240 
WD40-rpts                                                                                      

Query      241 DDEEEPEAEAQEMEEPQYESKVDEKDDDDNGSSSSKKGHPSEDGDSTRNGETPTDRRNSGAIEETADGESSAQSAAEKKN 320 
WD40-rpts                                                                                      

Query      321 SGDDGNGGGGEMSILLVKNAQIVNDDAIFVADILIEDGIIQNVAPNLEAPEGAEVLDAAGKLALPAGIDVYTQVTDSSVD 400 
WD40-rpts                                                                                      

Query      401 DLSTGCKSAIAGGTGTIVEVVRPRGAESVVSAVKRVKNQLEKSGISCHVALSVAITDFCEQEMSELVKNEGINSFVLDGV 480 
WD40-rpts                                                                                      

Query      481 SLTDDKLLELFEHVKRLGALIRVVPENKSIVAMLEKKMLKLGVTGPEGFPQSRPESLEADRVSGVCVLGNLASCPISIVQ 560 
WD40-rpts                                                                                      

Query      561 VSSADSLAAIEKARASGALAHAEIASAAVTADGSALFSQDLRFASAHLTDVPLRRGAPDRMIGALSTQPLVVCTSGHRPV 640 
WD40-rpts                                                                        (_____________

Query      641 NSATRVAAKDFAIAQKGSTGAEERMAVVWERAVRSGRIDAMRFVAVTSTNAAKMFNMYPKKGRIAVGADADLVIWDASGK 720 
WD40-rpts      _____________________________WD 1__________________________________________)    

Query      721 RVLESSRAQSSQENSMYDGLTVHSVVTATIVGGKIAYQNGEVREAPVAGGFLRLSPNSPYLFSMVGQRDKFANVERVERE 800 
WD40-rpts                                                                                      

Query      801 ASSQQQKPQQNGHHKNSGDFDRNRTKVMESSIDFGGSAANRPRNPPGGRTTGFW 854 
WD40-rpts                                                            

1 WD40-repeats found in QUERY=Y37E11C.1 (Len=854):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 15   627-716      4.17  286.86  0.00845       20.0%     17.31

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  627-716    TQPLVVCTSGHRPVNSATRVAAKDFAIAQKGSTGAEERMAVVWERAVRSGRIDAMRFVAVTSTNAAKMFNMYPKKGRIAVGADADLVIWD

   WD40 Template    TGECLRTLSGHTSGV-------TSVSFSPDGKR------------------LV-------------------------SGSEDGTIKVWD